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Webservers
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Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based
:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based
:
GeNMR
I-TASSER
Refinement
:
Amber
Structure from chemical shifts:
Fragment-based
:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based
:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega
- Proline
Secondary structure from chemical shifts:
CSI
(via RCI server)
TALOS
MICS
caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2
or
SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift
- Methyl
ArShift
- Aromatic
ShiftS
Proshift
PPM
CheShift-2
- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR
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Detection of Transient Protein Folding Populations by Mass Spectrometry - Science
Detection of Transient Protein Folding Populations by Mass Spectrometry - Science Detection of Transient Protein Folding Populations by Mass Spectrometry Science Read here
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NMR Assignment of Methyl Groups in Immobilized Proteins Using Multiple-Bond - Frontiers
NMR Assignment of Methyl Groups in Immobilized Proteins Using Multiple-Bond - Frontiers NMR Assignment of Methyl Groups in Immobilized Proteins Using Multiple-Bond Frontiers Read here
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Demonstration of Positionally Disordered Water Within a Protein Hydrophobic Cavity by NMR - Science
Demonstration of Positionally Disordered Water Within a Protein Hydrophobic Cavity by NMR - Science Demonstration of Positionally Disordered Water Within a Protein Hydrophobic Cavity by NMR Science Read here
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Kurt Wüthrich | Nobel Prize, Protein Structure & Biochemistry - Britannica
Kurt Wüthrich | Nobel Prize, Protein Structure & Biochemistry - Britannica Kurt Wüthrich | Nobel Prize, Protein Structure & Biochemistry Britannica Read here
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Toward protein NMR at physiological concentrations by hyperpolarized water—Finding and mapping uncharted conformational spaces - Science
Toward protein NMR at physiological concentrations by hyperpolarized water—Finding and mapping uncharted conformational spaces - Science Toward protein NMR at physiological concentrations by hyperpolarized water—Finding and mapping uncharted conformational spaces Science Read here
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Efficient and economic protein labeling for NMR in mammalian expression systems: Application to a preT-cell and T-cell receptor protein - Wiley Online Library
Efficient and economic protein labeling for NMR in mammalian expression systems: Application to a preT-cell and T-cell receptor protein - Wiley Online Library Efficient and economic protein labeling for NMR in mammalian expression systems: Application to a preT-cell and T-cell receptor protein Wiley Online Library Read here
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Interactions between the protein barnase and co-solutes studied by NMR | Communications Chemistry - Nature.com
Interactions between the protein barnase and co-solutes studied by NMR | Communications Chemistry - Nature.com Interactions between the protein barnase and co-solutes studied by NMR | Communications Chemistry Nature.com Read here
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Fragment-Based Ligand Discovery Using Protein-Observed - ACS Publications
Fragment-Based Ligand Discovery Using Protein-Observed - ACS Publications Fragment-Based Ligand Discovery Using Protein-Observed ACS Publications Read here
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NMR-based investigation into protein phosphorylation - ScienceDirect.com
NMR-based investigation into protein phosphorylation - ScienceDirect.com NMR-based investigation into protein phosphorylation ScienceDirect.com Read here
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Quantifying the thermodynamics of protein unfolding using 2D NMR spectroscopy | Communications Chemistry - Nature.com
Quantifying the thermodynamics of protein unfolding using 2D NMR spectroscopy | Communications Chemistry - Nature.com Quantifying the thermodynamics of protein unfolding using 2D NMR spectroscopy | Communications Chemistry Nature.com Read here
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