Web-based open-source program determines protein structures - Phys.Org

		BioNMR > NMR community > Online News
Web-based open-source program determines protein structures - Phys.Org

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-09-2017, 01:16 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,734

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Web-based open-source program determines protein structures - Phys.Org

Phys.Org

Web-based open-source program determines protein structures
Phys.Org
In particular, experts in nuclear magnetic resonance spectroscopy, which is highly complementary to X-ray crystallography." He also advocates that biologists develop more awareness of the importance of structural biology for their research. "Wisely ...

Web-based open-source program determines protein structures - Phys.Org
More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
#VnmrJ is now open source From The DNP-NMR Blog: #VnmrJ is now open source I'm very pleased to learn that VnmrJ is now open source. The project is hosted on GitHub and detailed information is accessible through: http://openvnmrj.org Before you want to change to the OpenVnmrJ you should read this:	nmrlearner	News from NMR blogs	0	01-09-2016 01:07 AM
Measuring modified protein structures - Phys.Org <img alt="" height="1" width="1" /> Measuring modified protein structures Phys.Org Although there is a series of techniques to study structurally modified proteins, such as x-ray crystallography, nuclear magnetic resonance spectroscopy and other spectroscopic techniques, they cannot be used to analyse complex biological samples. and more » Measuring modified protein structures - Phys.Org More...	nmrlearner	Online News	0	09-15-2014 06:51 AM
New player emerges in mapping protein structures - Phys.Org <img alt="" height="1" width="1" /> New player emerges in mapping protein structures Phys.Org Scientists also use nuclear magnetic resonance imaging to solve structures. And coming in at a distant third is a technique called single-particle cryoelectron microscopy (cryo-EM), in which a macromolecule is immobilized in a thin film of vitrified ... and more » New player emerges in mapping protein structures - Phys.Org More...	nmrlearner	Online News	0	09-20-2013 02:39 PM
rNMR: Open Source Software for NMR Data Analysis rNMR: Open Source Software for NMR Data Analysis Software for HTP NMR of small molecules More...	nmrlearner	General	0	06-05-2013 06:53 PM
CONNJUR spectrum translator: an open source application for reformatting NMR spectral data CONNJUR spectrum translator: an open source application for reformatting NMR spectral data Abstract NMR spectroscopists are hindered by the lack of standardization for spectral data among the file formats for various NMR data processing tools. This lack of standardization is cumbersome as researchers must perform their own file conversion in order to switch between processing tools and also restricts the combination of tools employed if no conversion option is available. The CONNJUR Spectrum Translator introduces a new, extensible architecture for spectrum translation and introduces two...	nmrlearner	Journal club	0	03-18-2011 06:51 PM
CONNJUR - open source integration environment for biomolecular NMR data analysis CONNJUR Project website The CONNJUR Project is developing an open source integration environment for biomolecular NMR data analysis. CONNJUR software is a workflow generator, based on legacy NMR analysis applications, that is being developed as Open Source Software -- it is perpetually free for anyone to use, modify and distribute. CONNJUR is developed by a community of NMR spectroscopists and scientific programmers who aim to create and maintain NMR analysis tools bounded by the goals of excellent end-product, free of charge, open source software using the...	markber	NMR software	0	11-01-2010 07:45 PM
[NMR software blog] Open Source NMR freeware Open Source NMR freeware Most of the readers arrive here using Google, without knowing me and my blog. Usually they get very angry because they arrive... on the trapping post I wrote 3 years ago! I want to do something to keep them glad... So you want "open source" stuff? Do you know what it really means? Are you ready to compile, test, debug it and add a graphic interface to it? Just because you asked for it, here is a list of available projects. If you know other links, add them into a comment. CCPN NPK matNMR ProSpectND	nmrlearner	News from NMR blogs	0	08-21-2010 06:29 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off