Using NMR to Study Protein Structure, Dynamics and Mechanisms - News-Medical.Net

		BioNMR > NMR community > Online News
Using NMR to Study Protein Structure, Dynamics and Mechanisms - News-Medical.Net

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-11-2023, 02:49 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,734

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Using NMR to Study Protein Structure, Dynamics and Mechanisms - News-Medical.Net

Using NMR to Study Protein Structure, Dynamics and Mechanisms - News-Medical.Net

Using NMR to Study Protein Structure, Dynamics and Mechanisms News-Medical.Net Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Study uncovers a novel fold within the SARS-CoV-2 replication co-factor non-structural protein 9 - News-Medical.Net Study uncovers a novel fold within the SARS-CoV-2 replication co-factor non-structural protein 9 - News-Medical.Net Study uncovers a novel fold within the SARS-CoV-2 replication co-factor non-structural protein 9 News-Medical.Net Read here	nmrlearner	Online News	0	04-16-2023 11:19 PM
Study uses computational modeling of coronavirus spike proteins to examine dynamics responsible for immunogenicity and immune escape - News-Medical.Net Study uses computational modeling of coronavirus spike proteins to examine dynamics responsible for immunogenicity and immune escape - News-Medical.Net Study uses computational modeling of coronavirus spike proteins to examine dynamics responsible for immunogenicity and immune escape News-Medical.Net Read here	nmrlearner	Online News	0	08-26-2021 06:47 AM
Mosquito protein study could lead to therapeutics against deadly viruses - News-Medical.Net Mosquito protein study could lead to therapeutics against deadly viruses News-Medical.Net Mosquito protein study could lead to therapeutics against deadly viruses - News-Medical.Net More...	nmrlearner	Online News	0	03-11-2021 06:03 AM
Using NMR to Study Protein Structure, Dynamics and Mechanisms - News-Medical.net Using NMR to Study Protein Structure, Dynamics and Mechanisms - News-Medical.net Using NMR to Study Protein Structure, Dynamics and Mechanisms News-Medical.net Read here	nmrlearner	Online News	0	02-29-2020 09:52 PM
Novel use of EPR spectroscopy to study in vivo protein structure - News-Medical.net Novel use of EPR spectroscopy to study in vivo protein structure - News-Medical.net http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcR-TSHFK7vSbGNdpZJQpP9KcobZMFsdBIaF00_tgYfeSQCSib3oJ9dwgPj9ELRxg2cFClAG81w News-Medical.net <img alt="" height="1" width="1"> Novel use of EPR spectroscopy to study in vivo protein structure News-Medical.net More recently, increases in the sensitivity of NMR and the use of isotope labelling have enabled determinations of the atomic level structure and dynamics of proteins to be determined within living cells1. NMR has been used to determine the...	nmrlearner	Online News	0	03-16-2016 12:13 AM
Study finding could shed light on molecular mechanisms underlying Huntington's disease - News-Medical.net http://www.bionmr.com//t3.gstatic.com/images?q=tbn:ANd9GcQ4bPSiC2GxHh2tSrBv-yw0PP4aV7KUqSJA__VTst6Y-abi8OKMJ34YPc5XvnrcWZZ7f9dPIKE Science World Report <img alt="" height="1" width="1"> Study finding could shed light on molecular mechanisms underlying Huntington's disease News-Medical.net ... the process," he said. "Using advanced nuclear magnetic resonance spectroscopy, we were able to provide an unprecedented view of the internal structure of the protein clumps that form in the disease, which we hope will one day lead to new therapies ... Researchers Describe Brain Plaques Involved In...	nmrlearner	Online News	0	02-04-2016 11:46 AM
Using NMR to study protein motion: an interview with Fabien Ferrage, Ã?cole ... - News-Medical.net Using NMR to study protein motion: an interview with Fabien Ferrage, Ã?cole ... - News-Medical.net <img alt="" height="1" width="1" /> Using NMR to study protein motion: an interview with Fabien Ferrage, Ã?cole ... News-Medical.net We have first applied the new technique to a model protein ubiquitin, which has been studied by NMR for 20 to 25 years and been very well characterized by various methods, including its structure and motions. What we have seen using this apparatus to ... and more » Read here	nmrlearner	Online News	0	08-19-2014 11:21 AM
Study could lead to better understanding of how Notch protein directs healthy ... - News-Medical.net Study could lead to better understanding of how Notch protein directs healthy ... - News-Medical.net <img alt="" height="1" width="1" /> Study could lead to better understanding of how Notch protein directs healthy ... News-Medical.net Johns Hopkins researchers report they have figured out how the aptly named protein Botch blocks the signaling protein called Notch, which helps regulate development. In a report on the discovery, to appear online April 24 in the journal Cell Reports ... Read here	nmrlearner	Online News	0	05-25-2014 06:31 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off