Unusual RNA binding properties found in protein essential for germ cell survival - Phys.org

		BioNMR > NMR community > Online News
Unusual RNA binding properties found in protein essential for germ cell survival - Phys.org

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

10-12-2022, 07:46 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,778

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Unusual RNA binding properties found in protein essential for germ cell survival - Phys.org

Unusual RNA binding properties found in protein essential for germ cell survival - Phys.org

Unusual RNA binding properties found in protein essential for germ cell survival Phys.org Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Two-part binding triggers signal activation of key regulatory protein within the cell - Phys.org Two-part binding triggers signal activation of key regulatory protein within the cell Phys.org Two-part binding triggers signal activation of key regulatory protein within the cell - Phys.org More...	nmrlearner	Online News	0	03-21-2022 04:01 AM
A direct protein-to-protein binding couples cell survival to cell proliferation - The Mix A direct protein-to-protein binding couples cell survival to cell proliferation - The Mix A direct protein-to-protein binding couples cell survival to cell proliferation The Mix Read here	nmrlearner	Online News	0	04-07-2020 07:35 PM
UAB Researchers Found Direct Protein-To-Protein Binding Couples Cell Survival To Cell Proliferation - Patch.com UAB Researchers Found Direct Protein-To-Protein Binding Couples Cell Survival To Cell Proliferation - Patch.com UAB Researchers Found Direct Protein-To-Protein Binding Couples Cell Survival To Cell Proliferation Patch.com Read here	nmrlearner	Online News	0	04-07-2020 07:35 PM
A direct protein-to-protein binding couples cell survival to cell proliferation - EurekAlert A direct protein-to-protein binding couples cell survival to cell proliferation - EurekAlert A direct protein-to-protein binding couples cell survival to cell proliferation EurekAlert Read here	nmrlearner	Online News	0	04-03-2020 09:41 PM
'Rheostat' identified that helps regulate cell death versus survival decisions - Phys.Org http://www.bionmr.com//t3.gstatic.com/images?q=tbn:ANd9GcRRgmdouMLffzhui4bI-9zmifhZCNSw-SZDoZb92H0UvEvAnArK8VB26wYu7CPNl79gpMJ2-Lno Phys.Org <img alt="" height="1" width="1"> 'Rheostat' identified that helps regulate cell death versus survival decisions Phys.Org Researchers used nuclear magnetic resonance (NMR) spectroscopy and other tests to determine how modification of the protein's IDR influenced cell survival. For example, investigators reported that "adjusting" an amino acid in the intrinsically ... 'Rheostat' identified that helps regulate cell death versus survival...	nmrlearner	Online News	0	03-06-2018 03:20 PM
[NMR paper] Essential dynamics from NMR clusters: dynamic properties of the Myb DNA-binding domai Essential dynamics from NMR clusters: dynamic properties of the Myb DNA-binding domain and a hinge-bending enhancing variant. Related Articles Essential dynamics from NMR clusters: dynamic properties of the Myb DNA-binding domain and a hinge-bending enhancing variant. Methods. 1998 Mar;14(3):318-28 Authors: van Aalten DM, Grotewold E, Joshua-Tor L Application of the "essential dynamics" method to the NMR cluster of structures for the R2R3 DNA-binding domain of the mouse c-Myb transcriptional activator is described. Using this method, large...	nmrlearner	Journal club	0	11-17-2010 11:06 PM
[NMR paper] Unusual NMR, EPR, and Mössbauer properties of Chromatium vinosum 2[4Fe-4S] ferredoxi Unusual NMR, EPR, and Mössbauer properties of Chromatium vinosum 2 ferredoxin. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-acspubs.jpg Related Articles Unusual NMR, EPR, and Mössbauer properties of Chromatium vinosum 2 ferredoxin. Biochemistry. 1999 May 11;38(19):6335-45 Authors: Kyritsis P, Kümmerle R, Huber JG, Gaillard J, Guigliarelli B, Popescu C, Münck E, Moulis JM The ferredoxin from Chromatium vinosum (CvFd) exhibits sequence and structure peculiarities. Its two Fe4S4(SCys)4 clusters have unusually...	nmrlearner	Journal club	0	08-21-2010 04:03 PM
Wheat Germ Cell-Free Protein Production Workshop Wheat Germ Cell-Free Protein Production Workshop PDF file The Center for Eukaryotic Structural Genomics (CESG) and the Nuclear Magnetic Resonance Facility at Madison (NMRFAM) are pleased to announce the first Wheat Germ Cell-Free Protein Production Workshop to be held from July 30 - August 4, 2006, at the Department of Biochemistry at the University of Wisconsin-Madison in Madison, Wisconsin, USA. To register for this workshop, complete the Registration Form on the next page and mail in with your NONREFUNDABLE	nmrlearner	Conferences	0	05-23-2006 09:39 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off