Under the electron microscope - a 3D image of an individual protein - Nanowerk LLC

		BioNMR > NMR community > Online News
Under the electron microscope - a 3D image of an individual protein - Nanowerk LLC

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

01-25-2012, 08:56 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Under the electron microscope - a 3D image of an individual protein - Nanowerk LLC

Nanowerk LLC

Under the electron microscope - a 3D image of an individual protein
Nanowerk LLC
C) Analysis shows how the particle structure is formed by three ApoA-1 proteins (red, green, blue noodle-like models) Scientists routinely create models of proteins using X-ray diffraction, nuclear magnetic resonance, and conventional cryo-electron ...

Under the electron microscope - a 3D image of an individual protein - Nanowerk LLC
More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Under the electron microscope -- A 3-D image of an individual protein - PhysOrg.com http://www.bionmr.com//nt0.ggpht.com/news/tbn/qMGYMYLE13ZlwM/6.jpg PhysOrg.com <img alt="" height="1" width="1" /> Under the electron microscope -- A 3-D image of an individual protein PhysOrg.com Scientists routinely create models of proteins using X-ray diffraction, nuclear magnetic resonance, and conventional cryo-electron microscope (cryoEM) imaging. But these models require computer â??averagingâ?? of data from analysis of thousands, ... Under the electron microscope - a 3D image of an individual proteinNanowerk LLC all 8 news articles »	nmrlearner	Online News	0	01-26-2012 12:10 AM
Effect of Freezing Conditions on Distances and Their Distributions Derived from Double Electron Electron Resonance (DEER): A Study of Doubly-Spin-Labeled T4 Lysozyme Effect of Freezing Conditions on Distances and Their Distributions Derived from Double Electron Electron Resonance (DEER): A Study of Doubly-Spin-Labeled T4 Lysozyme Publication year: 2012 Source: Journal of Magnetic Resonance, Available online 24 January 2012</br> Elka R.Georgieva, Aritro S.Roy, Vladimir M.Grigoryants, Petr P.Borbat, Keith A.*Earle, ...</br> Pulsed dipolar ESR spectroscopy, DEER and DQC, require frozen samples. An important issue in the biological application of this technique is how the freezing rate and concentration of cryoprotectant could possibly affect the...	nmrlearner	Journal club	0	01-25-2012 08:56 AM
[NMRpipe Yahoo group] 3D cube image in NMRPipe 3D cube image in NMRPipe Hello, I'm trying to run the nmrCube.tcl script that I found posted here, and I get the message "command not found". I guess it has nothing to do with the More...	NMRpipe Yahoo group news	News from other NMR forums	0	04-15-2011 01:40 AM
[NMR images] Fundamentals of Protein NMR Spectroscopy by Rule, Gordon, Hitchens, T. Kevin,. Expand Image http://images.betterworldbooks.com/140/Fundamentals-of-Protein-NMR-Spectroscopy-9781402034992.jpg betterworldbooks.com 17/03/2011 6:31:23 PM GMT Fundamentals of Protein NMR Spectroscopy by Rule, Gordon, Hitchens, T. Kevin,. Expand Image More...	nmrlearner	NMR pictures	0	03-21-2011 07:27 PM
[NMR paper] Gated electron transfers and electron pathways in azurin: a NMR dynamic study at mult Gated electron transfers and electron pathways in azurin: a NMR dynamic study at multiple fields and temperatures. Related Articles Gated electron transfers and electron pathways in azurin: a NMR dynamic study at multiple fields and temperatures. J Mol Biol. 2004 Oct 1;342(5):1599-611 Authors: Zhuravleva AV, Korzhnev DM, Kupce E, Arseniev AS, Billeter M, Orekhov VY Dynamic properties of electron transfer pathways in a small blue copper cupredoxin are explored using an extensive 15N NMR relaxation study of reduced Pseudomonas aeruginosa azurin...	nmrlearner	Journal club	0	11-24-2010 10:01 PM
Scientists discover proton diode - Nanowerk LLC Scientists discover proton diode - Nanowerk LLC http://nt2.ggpht.com/news/tbn/YpyTYz786esmaM/6.jpg Nanowerk LLC <img alt="" height="1" width="1" /> Scientists discover proton diode Nanowerk LLC The current work shows that proteins also use precisely this mechanism and that the water molecules do indeed carry out an active function in the protein. ... and more »	nmrlearner	Online News	0	09-02-2010 03:58 PM
[NMR paper] Protein folding monitored at individual residues during a two-dimensional NMR experim Protein folding monitored at individual residues during a two-dimensional NMR experiment. Related Articles Protein folding monitored at individual residues during a two-dimensional NMR experiment. Science. 1996 Nov 15;274(5290):1161-3 Authors: Balbach J, Forge V, Lau WS, van Nuland NA, Brew K, Dobson CM An approach is described to monitor directly at the level of individual residues the formation of structure during protein folding. A two-dimensional heteronuclear nuclear magnetic resonance (NMR) spectrum was recorded after the rapid...	nmrlearner	Journal club	0	08-22-2010 02:20 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off