A trick to fold proteins more quickly - Nanowerk - Nanowerk

		BioNMR > NMR community > Online News
A trick to fold proteins more quickly - Nanowerk - Nanowerk

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-08-2013, 02:49 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

A trick to fold proteins more quickly - Nanowerk - Nanowerk

A trick to fold proteins more quickly - Nanowerk - Nanowerk

Nanowerk

A trick to fold proteins more quickly - Nanowerk
Nanowerk
... to create restraints to be applied to the modelâ??, explained Laio, who has coordinated the research published in Proceedings of the National Academy of Sciences ("Characterization of the free-energy landscapes of proteins by NMR-guided metadynamics").

and more »
Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
A trick to fold proteins more quickly: 'Clever' technique speeds up the ... - Science Daily (press release) <img alt="" height="1" width="1" /> A trick to fold proteins more quickly: 'Clever' technique speeds up the ... Science Daily (press release) "We exploit the experimental data obtained observing the proteins through nuclear magnetic resonance, and use them to create restraints to be applied to the model," explained Laio, who has coordinated the research published in Proceedings of the ... and more » A trick to fold proteins more quickly: 'Clever' technique speeds up the ... - Science Daily (press release) More...	nmrlearner	Online News	0	05-08-2013 02:49 PM
A trick to fold proteins more quickly - PhysOrg.com - Phys.Org <img alt="" height="1" width="1" /> A trick to fold proteins more quickly - PhysOrg.com Phys.Org "We exploit the experimental data obtained observing the proteins through nuclear magnetic resonance, and use them to create restraints to be applied to the model", explained Laio, who has coordinated the research published in Proceedings of the ... A trick to fold proteins more quickly - PhysOrg.com - Phys.Org More...	nmrlearner	Online News	0	05-08-2013 02:49 PM
Fold it: Solid-state NMR unravels proteins - spectroscopyNOW.com Fold it: Solid-state NMR unravels proteins - spectroscopyNOW.com <img alt="" height="1" width="1" /> Fold it: Solid-state NMR unravels proteins spectroscopyNOW.com Researchers have developed a novel solid-state NMR spectroscopic method that uses paramagnetic tags to help them visualize the shape of protein molecules. The technique could be used to help scientists understand the properties of various biological ... Read here	nmrlearner	Online News	0	04-01-2012 03:58 PM
Fold it: Solid-state NMR unravels proteins Fold it: Solid-state NMR unravels proteins Researchers have developed a novel solid-state NMR spectroscopic method that uses paramagnetic tags to help them visualize the shape of protein molecules. The technique could be used to help scientists understand the properties of various biological molecules under normal, healthy conditions and also in those that are involved in a range of diseases. Source: Spectroscopynow.com	nmrlearner	General	0	04-01-2012 03:58 PM
Under the electron microscope - a 3D image of an individual protein - Nanowerk LLC http://www.bionmr.com//nt3.ggpht.com/news/tbn/Z0OFJYBjRagnLM/6.jpg Nanowerk LLC <img alt="" height="1" width="1" /> Under the electron microscope - a 3D image of an individual protein Nanowerk LLC C) Analysis shows how the particle structure is formed by three ApoA-1 proteins (red, green, blue noodle-like models) Scientists routinely create models of proteins using X-ray diffraction, nuclear magnetic resonance, and conventional cryo-electron ... Under the electron microscope - a 3D image of an individual protein - Nanowerk LLC	nmrlearner	Online News	0	01-25-2012 08:56 AM
Scientists discover proton diode - Nanowerk LLC Scientists discover proton diode - Nanowerk LLC http://nt2.ggpht.com/news/tbn/YpyTYz786esmaM/6.jpg Nanowerk LLC <img alt="" height="1" width="1" /> Scientists discover proton diode Nanowerk LLC The current work shows that proteins also use precisely this mechanism and that the water molecules do indeed carry out an active function in the protein. ... and more »	nmrlearner	Online News	0	09-02-2010 03:58 PM
[NMR paper] An approach to global fold determination using limited NMR data from larger proteins An approach to global fold determination using limited NMR data from larger proteins selectively protonated at specific residue types. An approach to global fold determination using limited NMR data from larger proteins selectively protonated at specific residue types. J Biomol NMR. 1996 Oct;8(3):360-8 Authors: Smith BO, Ito Y, Raine A, Teichmann S, Ben-Tovim L, Nietlispach D, Broadhurst RW, Terada T, Kelly M, Oschkinat H, Shibata T, Yokoyama S, Laue ED A combination of calculation and experiment is used to demonstrate that the global fold of...	nmrlearner	Journal club	0	08-22-2010 02:20 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off