Threading single proteins through pores to compare their energy landscapes | Proceedings of the National Academy of Sciences - pnas.org

		BioNMR > NMR community > Online News
Threading single proteins through pores to compare their energy landscapes \| Proceedings of the National Academy of Sciences - pnas.org

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

10-06-2022, 06:14 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Threading single proteins through pores to compare their energy landscapes | Proceedings of the National Academy of Sciences - pnas.org

Threading single proteins through pores to compare their energy landscapes | Proceedings of the National Academy of Sciences - pnas.org

Threading single proteins through pores to compare their energy landscapes | Proceedings of the National Academy of Sciences pnas.org Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Mechanism by which T7 bacteriophage protein Gp1.2 inhibits Escherichia coli dGTPase \| Proceedings of the National Academy of Sciences - pnas.org Mechanism by which T7 bacteriophage protein Gp1.2 inhibits Escherichia coli dGTPase \| Proceedings of the National Academy of Sciences - pnas.org Mechanism by which T7 bacteriophage protein Gp1.2 inhibits Escherichia coli dGTPase \| Proceedings of the National Academy of Sciences pnas.org Read here	nmrlearner	Online News	0	09-15-2022 06:02 AM
Mechanism by which T7 bacteriophage protein Gp1.2 inhibits Escherichia coli dGTPase \| Proceedings of the National Academy of Sciences - pnas.org Mechanism by which T7 bacteriophage protein Gp1.2 inhibits Escherichia coli dGTPase \| Proceedings of the National Academy of Sciences - pnas.org Mechanism by which T7 bacteriophage protein Gp1.2 inhibits Escherichia coli dGTPase \| Proceedings of the National Academy of Sciences pnas.org Read here	nmrlearner	Online News	0	09-07-2022 04:33 AM
Structural basis of lipoprotein recognition by the bacterial Lol trafficking chaperone LolA \| Proceedings of the National Academy of Sciences - pnas.org Structural basis of lipoprotein recognition by the bacterial Lol trafficking chaperone LolA \| Proceedings of the National Academy of Sciences - pnas.org Structural basis of lipoprotein recognition by the bacterial Lol trafficking chaperone LolA \| Proceedings of the National Academy of Sciences pnas.org Read here	nmrlearner	Online News	0	09-07-2022 04:33 AM
De novo designed protein inhibitors of amyloid aggregation and seeding \| Proceedings of the National Academy of Sciences - pnas.org De novo designed protein inhibitors of amyloid aggregation and seeding \| Proceedings of the National Academy of Sciences - pnas.org De novo designed protein inhibitors of amyloid aggregation and seeding \| Proceedings of the National Academy of Sciences pnas.org Read here	nmrlearner	Online News	0	08-24-2022 02:40 PM
Bioinspired stretchable molecular composites of 2D-layered materials and tandem repeat proteins \| Proceedings of the National Academy of Sciences - pnas.org Bioinspired stretchable molecular composites of 2D-layered materials and tandem repeat proteins \| Proceedings of the National Academy of Sciences - pnas.org Bioinspired stretchable molecular composites of 2D-layered materials and tandem repeat proteins \| Proceedings of the National Academy of Sciences pnas.org Read here	nmrlearner	Online News	0	07-28-2022 08:34 AM
Multi-eGO: An in silico lens to look into protein aggregation kinetics at atomic resolution \| Proceedings of the National Academy of Sciences - pnas.org Multi-eGO: An in silico lens to look into protein aggregation kinetics at atomic resolution \| Proceedings of the National Academy of Sciences - pnas.org Multi-eGO: An in silico lens to look into protein aggregation kinetics at atomic resolution \| Proceedings of the National Academy of Sciences pnas.org Read here	nmrlearner	Online News	0	06-23-2022 06:52 PM
A modular approach to map out the conformational landscapes of unbound intrinsically disordered proteins \| Proceedings of the National Academy of Sciences - pnas.org A modular approach to map out the conformational landscapes of unbound intrinsically disordered proteins \| Proceedings of the National Academy of Sciences - pnas.org A modular approach to map out the conformational landscapes of unbound intrinsically disordered proteins \| Proceedings of the National Academy of Sciences pnas.org Read here	nmrlearner	Online News	0	06-04-2022 09:42 AM
Accurate model of liquid–liquid phase behavior of intrinsically disordered proteins from optimization of single-chain properties \| Proceedings of the National Academy of Sciences - pnas.org Accurate model of liquid–liquid phase behavior of intrinsically disordered proteins from optimization of single-chain properties \| Proceedings of the National Academy of Sciences - pnas.org Accurate model of liquid–liquid phase behavior of intrinsically disordered proteins from optimization of single-chain properties \| Proceedings of the National Academy of Sciences pnas.org Read here	nmrlearner	Online News	0	06-03-2022 07:40 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off