Study shows how protein structure can pump toxic molecules out of bacterial cells - Tech Explorist

		BioNMR > NMR community > Online News
Study shows how protein structure can pump toxic molecules out of bacterial cells - Tech Explorist

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

02-23-2022, 08:04 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Study shows how protein structure can pump toxic molecules out of bacterial cells - Tech Explorist

Study shows how protein structure can pump toxic molecules out of bacterial cells - Tech Explorist

Study shows how protein structure can pump toxic molecules out of bacterial cells Tech Explorist Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Structure of protein that can pump toxic molecules out of bacterial cells revealed - News-Medical.net Structure of protein that can pump toxic molecules out of bacterial cells revealed - News-Medical.net Structure of protein that can pump toxic molecules out of bacterial cells revealed News-Medical.net Read here	nmrlearner	Online News	0	02-19-2022 03:57 PM
Study shows how protein structure can pump toxic molecules out of bacterial cells - Tech Explorist Study shows how protein structure can pump toxic molecules out of bacterial cells Tech Explorist Study shows how protein structure can pump toxic molecules out of bacterial cells - Tech Explorist More...	nmrlearner	Online News	0	02-18-2022 12:50 PM
How Common ALS Mutation Damages Cells and Leads to Toxic Protein Being Produced Detailed in Study - ALS News Today How Common ALS Mutation Damages Cells and Leads to Toxic Protein Being Produced Detailed in Study - ALS News Today How Common ALS Mutation Damages Cells and Leads to Toxic Protein Being Produced Detailed in Study ALS News TodayRepeat expansion in the C9orf72 gene, a known ALS mutation, was foun in a lab study to change the length of proteins called DPRs, turning them toxic. Read here	nmrlearner	Online News	0	04-15-2019 07:29 PM
[NMR paper] Backbone NMR assignments of HypF-N under conditions generating toxic and non-toxic oligomers. Backbone NMR assignments of HypF-N under conditions generating toxic and non-toxic oligomers. Related Articles Backbone NMR assignments of HypF-N under conditions generating toxic and non-toxic oligomers. Biomol NMR Assign. 2018 May 21;: Authors: Patel JR, Xu Y, Capitini C, Chiti F, De Simone A Abstract The HypF protein is involved in the maturation and regulation of hydrogenases. The N-terminal domain of HypF (HypF-N) has served as a key model system to study the pathways of protein amyloid formation and the nature of the...	nmrlearner	Journal club	0	05-24-2018 12:57 AM
[NMR paper] NMR metabolomics reveals metabolism-mediated protective effects in liver (HepG2) cells exposed to sub-toxic levels of silver nanoparticles. NMR metabolomics reveals metabolism-mediated protective effects in liver (HepG2) cells exposed to sub-toxic levels of silver nanoparticles. NMR metabolomics reveals metabolism-mediated protective effects in liver (HepG2) cells exposed to sub-toxic levels of silver nanoparticles. J Proteome Res. 2018 Mar 02;: Authors: Carrola J, Pinto RJB, Nasirpour M, Freire CSR, Gil AM, Santos C, Oliveira H, Duarte IF Abstract The expansion of biomedical and therapeutic applications of silver nanoparticles (AgNPs) raises the need to further...	nmrlearner	Journal club	0	03-03-2018 12:01 PM
Parkinson's disease: How toxic proteins damage healthy brain cells - Medical News Today http://www.bionmr.com//t3.gstatic.com/images?q=tbn:ANd9GcTAN_Ml86iteMtG9Ef-I1DwFOYRfzM_fj8ovWsUz9KEU7Efr-Ld-xzpbdMhgicjRXYZCsFZQ90 Medical News Today <img alt="" height="1" width="1"> Parkinson's disease: How toxic proteins damage healthy brain cells Medical News Today Scientists have gained insights into how toxic proteins disrupt healthy cell membranes in a process that leads to brain cell death in Parkinson's disease. Researchers explore how toxic protein clusters linked to Parkinson's ...Brinkwire (press release) all 3 news articles »	nmrlearner	Online News	0	12-18-2017 11:19 PM
Study shows how mutations disrupt ALS-linked protein - Science Codex <img alt="" height="1" width="1"> Study shows how mutations disrupt ALS-linked protein Science Codex Using nuclear magnetic resonance, computer simulations and microscopy, Fawzi, Brown graduate student Alexander Conicella and colleagues at Lehigh University were able to show that under normal circumstances, TDP-43 molecules concentrate into little ... Study shows how mutations disrupt ALS-linked protein - Science Codex More...	nmrlearner	Online News	0	08-19-2016 05:49 PM
Assessing the biosimilarity of protein drugs: New study shows method's precision - Phys.Org Assessing the biosimilarity of protein drugs: New study shows method's precision - Phys.Org http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcQRw4Xv7DAonuTByRXOGoGrmYZNiYJ7D1yAWHUqcRsVsXFRiUd3TmoRj-k0_B-rqRqiljnFtTE Phys.Org <img alt="" height="1" width="1"> Assessing the biosimilarity of protein drugs: New study shows method's precision Phys.Org Monoclonal antibodies are the largest class of approved protein therapeutics in the world, and the ability to extend 2D-NMR methods to this class of therapeutic would represent an important landmark in their analytical...	nmrlearner	Online News	0	02-06-2016 03:05 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off