Study details power of new chip to diagnose disease, analyze proteins - R & D Magazine

		BioNMR > NMR community > Online News
Study details power of new chip to diagnose disease, analyze proteins - R & D Magazine

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-21-2012, 02:05 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Study details power of new chip to diagnose disease, analyze proteins - R & D Magazine

Study details power of new chip to diagnose disease, analyze proteins - R & D Magazine

Study details power of new chip to diagnose disease, analyze proteins
R & D Magazine
Researchers at the Stanford University School of Medicine and Intel Corp. have collaborated to synthesize and study a grid-like array of short pieces of a disease-associated protein on silicon chips normally used in computer microprocessors. They used ...

Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Bone tissue engineering: Attaching proteins for better regeneration - R & D Magazine Bone tissue engineering: Attaching proteins for better regeneration - R & D Magazine <img alt="" height="1" width="1" /> Bone tissue engineering: Attaching proteins for better regeneration R & D Magazine Hongxu Lu1, Naoki Kawazoe1, Takashi Kitajima2, Yuka Myoken3, Masahiro Tomita 3, Akihiro Umezawa4, Guoping Chen1, Yoshihiro Ito2 Spatial immobilization of bone morphogenetic protein-4 in a collagen-PLGA hybrid scaffold for enhanced osteoinductivity ... Read here	nmrlearner	Online News	0	08-02-2012 09:44 AM
Protein study brings muscle movement into sharper focus - R & D Magazine Protein study brings muscle movement into sharper focus - R & D Magazine http://www.bionmr.com//nt2.ggpht.com/news/tbn/GvATcJePGRWHmM/6.jpg R & D Magazine <img alt="" height="1" width="1" /> Protein study brings muscle movement into sharper focus R & D Magazine This has, for the first time, made it possible to correctly identify the location of proteins within the complex and to analyse the processes involved in muscle contraction. These findings could help ... JEOL to launch world's smallest solid-state NMR ...	nmrlearner	Online News	0	07-24-2012 08:19 AM
The hungry bypass veggies for starches, proteins - R & D Magazine The hungry bypass veggies for starches, proteins - R & D Magazine <img alt="" height="1" width="1" /> The hungry bypass veggies for starches, proteins R & D Magazine People coming off 18-hour fasts are more likely to opt for a starchy food or a protein instead of more healthful vegetables, finds a new study. ... JEOL to launch world's smallest solid-state NMR probe. Apr 12. According to JEOL Resonance, a new ... Read here	nmrlearner	Online News	0	07-07-2012 10:16 PM
Researchers develop way to strengthen proteins with polymers - R & D Magazine Researchers develop way to strengthen proteins with polymers - R & D Magazine http://www.bionmr.com//nt1.ggpht.com/news/tbn/1e8ZLQCvJy_rwM/6.jpg Azom.com <img alt="" height="1" width="1" /> Researchers develop way to strengthen proteins with polymers R & D Magazine Proteins are widely used as drugsâ??insulin for diabetics is the best known ... next week of a new 0.75-mm solid state nuclear magnetic resonance (NMR) probe. Polymers Can be Used to Stabilize ProteinsAzom.com	nmrlearner	Online News	0	06-13-2012 11:34 AM
A New Tool to Reveal Structure of Proteins - Lab Manager Magazine A New Tool to Reveal Structure of Proteins - Lab Manager Magazine <img alt="" height="1" width="1" /> A New Tool to Reveal Structure of Proteins Lab Manager Magazine For roughly a decade, a technique called solid state nuclear magnetic resonance (NMR) spectroscopy has allowed researchers to detect the arrangements of atoms in proteins that defy study by traditional laboratory tools such as X-ray crystallography. and more » Read here	nmrlearner	Online News	0	03-20-2012 10:52 PM
[NMR tweet] NMR for celiac disease: metabonomic insights: A nuclear magnetic resonance spectroscopic approach to the disease... http://bit.ly/ffTXaC NMR for celiac disease: metabonomic insights: A nuclear magnetic resonance spectroscopic approach to the disease... http://bit.ly/ffTXaC Published by pritihonrao (Priti Honrao) on 2011-01-05T02:32:56Z Source: Twitter	nmrlearner	Twitter NMR	0	01-05-2011 02:40 AM
[NMR paper] Transient complexes of redox proteins: structural and dynamic details from NMR studie Transient complexes of redox proteins: structural and dynamic details from NMR studies. Related Articles Transient complexes of redox proteins: structural and dynamic details from NMR studies. J Mol Recognit. 2004 Nov-Dec;17(6):524-39 Authors: Prudêncio M, Ubbink M Redox proteins participate in many metabolic routes, in particular those related to energy conversion. Protein-protein complexes of redox proteins are characterized by a weak affinity and a short lifetime. Two-dimensional NMR spectroscopy has been applied to many redox protein...	nmrlearner	Journal club	0	11-24-2010 10:03 PM
[NMR paper] Peptides and proteins in neurodegenerative disease: helix propensity of a polypeptide Peptides and proteins in neurodegenerative disease: helix propensity of a polypeptide containing helix 1 of the mouse prion protein studied by NMR and CD spectroscopy. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_120x27.gif Related Articles Peptides and proteins in neurodegenerative disease: helix propensity of a polypeptide containing helix 1 of the mouse prion protein studied by NMR and CD spectroscopy. Biopolymers. 1999;51(2):145-52 Authors: Liu A, Riek R, Zahn R,...	nmrlearner	Journal club	0	08-21-2010 04:03 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off