Structure determination of high-energy states in a dynamic protein ensemble - Nature.com

		BioNMR > NMR community > Online News
Structure determination of high-energy states in a dynamic protein ensemble - Nature.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

03-05-2022, 01:44 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,780

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Structure determination of high-energy states in a dynamic protein ensemble - Nature.com

Structure determination of high-energy states in a dynamic protein ensemble - Nature.com

Structure determination of high-energy states in a dynamic protein ensemble Nature.com Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Determining the structure of fleeting protein states - Nature.com Determining the structure of fleeting protein states Nature.com Determining the structure of fleeting protein states - Nature.com More...	nmrlearner	Online News	0	03-05-2022 01:44 AM
[NMR paper] High-Resolution NMR Determination of the Dynamic Structure of Membrane Proteins. High-Resolution NMR Determination of the Dynamic Structure of Membrane Proteins. High-Resolution NMR Determination of the Dynamic Structure of Membrane Proteins. Angew Chem Int Ed Engl. 2016 Jul 27; Authors: Jaremko M, Jaremko ?, Villinger S, Schmidt CD, Griesinger C, Becker S, Zweckstetter M Abstract (15) N spin-relaxation rates are demonstrated to provide critical information about the long-range structure and internal motions of membrane proteins. Combined with an improved calculation method, the relaxation-rate-derived...	nmrlearner	Journal club	0	07-28-2016 12:07 PM
Protein structure determination by combining sparse NMR data with evolutionary ... - Nature.com Protein structure determination by combining sparse NMR data with evolutionary ... - Nature.com http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcQt4ROxcirbsmGx2eocNyxOy2KXS28zU0-Tl-RnYcmF9nTAEFxp8hFacTn-QpyLN8UilrT40VY Nature.com <img alt="" height="1" width="1"> Protein structure determination by combining sparse NMR data with evolutionary ... Nature.com Accurate determination of protein structure by NMR spectroscopy is challenging for larger proteins, for which experimental data are often incomplete and ambiguous. Evolutionary sequence information together with advances in...	nmrlearner	Online News	0	10-25-2015 07:39 AM
Protein structure determination by combining sparse NMR data with evolutionary ... - Nature.com Protein structure determination by combining sparse NMR data with evolutionary ... - Nature.com http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcRAVMjcYJ2gxDPN-3Oth6tCSQX0HVph0fL6VLvmc9MUU9DwEpS7_iPfM2J5zIur2nI7-EtteAI Nature.com <img alt="" height="1" width="1"> Protein structure determination by combining sparse NMR data with evolutionary ... Nature.com Accurate determination of protein structure by NMR spectroscopy is challenging for larger proteins, for which experimental data are often incomplete and ambiguous. Evolutionary sequence information together with advances in...	nmrlearner	Online News	0	07-10-2015 04:22 PM
Researchers Successfully Maintain Enzymatic High-Energy States for Chemical ... - Azom.com http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcTNgTa_5IDWZ0ifCwEEVD6ECwO3Mh4ciuC6VwnrUv9uIxwSTCrhzcuuv_cjorqCeVFL9Ir-RaM Azom.com <img alt="" height="1" width="1"> Researchers Successfully Maintain Enzymatic High-Energy States for Chemical ... Azom.com Different types of sophisticated biophysical techniques, including x-ray crystallography and Nuclear Magnetic Resonance (NMR) have helped make the discovery in this study. One of the strengths of UmeÃ¥ University is the open cooperative climate with low ... 'Invisible' protein structure explains the power of enzymesChemie.de...	nmrlearner	Online News	0	07-07-2015 05:27 PM
Protein structure determination by combining sparse NMR data with evolutionary ... - Nature.com Protein structure determination by combining sparse NMR data with evolutionary ... - Nature.com http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcRAVMjcYJ2gxDPN-3Oth6tCSQX0HVph0fL6VLvmc9MUU9DwEpS7_iPfM2J5zIur2nI7-EtteAI Nature.com <img alt="" height="1" width="1"> Protein structure determination by combining sparse NMR data with evolutionary ... Nature.com Accurate determination of protein structure by NMR spectroscopy is challenging for larger proteins, for which experimental data are often incomplete and ambiguous. Evolutionary sequence information together with advances in...	nmrlearner	Online News	0	06-29-2015 07:21 PM
[NMR paper] Towards a true protein movie: A perspective on the potential impact of the ensemble-based structure determination using exact NOEs Towards a true protein movie: A perspective on the potential impact of the ensemble-based structure determination using exact NOEs Publication date: April 2014 Source:Journal of Magnetic Resonance, Volume 241</br> Author(s): Beat Vögeli , Julien Orts , Dean Strotz , Celestine Chi , Martina Minges , Marielle Aulikki Wälti , Peter Güntert , Roland Riek</br> Confined by the Boltzmann distribution of the energies of the states, a multitude of structural states are inherent to biomolecules. For a detailed understanding of a protein’s function, its entire...	nmrlearner	Journal club	0	03-22-2014 01:28 AM
Probing Dynamic Conformationsof the High-Molecular-Weight?B-Crystallin Heat Shock Protein Ensemble by NMR Spectroscopy Probing Dynamic Conformationsof the High-Molecular-Weight?B-Crystallin Heat Shock Protein Ensemble by NMR Spectroscopy Andrew J. Baldwin, Patrick Walsh, D. Flemming Hansen, Gillian R. Hilton, Justin L. P. Benesch, Simon Sharpe and Lewis E. Kay http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja307874r/aop/images/medium/ja-2012-07874r_0005.gif Journal of the American Chemical Society DOI: 10.1021/ja307874r http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/qcs9RnHBiBY	nmrlearner	Journal club	0	09-08-2012 08:44 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off