St. Jude and Scripps Research Institute scientists help launch Human Dark ... - News-Medical.net

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St. Jude and Scripps Research Institute scientists help launch Human Dark ... - News-Medical.net

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NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

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NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

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11-10-2015, 09:10 AM

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St. Jude and Scripps Research Institute scientists help launch Human Dark ... - News-Medical.net

News-Medical.net

St. Jude and Scripps Research Institute scientists help launch Human Dark ...
News-Medical.net
Recent developments in technology, including advances in nuclear magnetic resonance (NMR) spectroscopy methods, now make it possible to look in detail at these â??intrinsically disordered proteinsâ?? (IDPs) and the â??intrinsically disordered regionsâ?? (IDRs ...
St. Jude, Scripps Launch Effort to Explore Intrinsically Disordered ProteomeGenomeWeb

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St. Jude and Scripps Research Institute scientists help launch Human Dark ... - News-Medical.net
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