Species identification of silks by protein mass spectrometry reveals evidence of wild silk use in antiquity

		BioNMR > NMR community > Online News
Species identification of silks by protein mass spectrometry reveals evidence of wild silk use in antiquity \| Scientific Reports - Nature.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

03-18-2022, 12:01 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,733

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Species identification of silks by protein mass spectrometry reveals evidence of wild silk use in antiquity | Scientific Reports - Nature.com

Species identification of silks by protein mass spectrometry reveals evidence of wild silk use in antiquity | Scientific Reports - Nature.com

Species identification of silks by protein mass spectrometry reveals evidence of wild silk use in antiquity | Scientific Reports Nature.com Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Effective prediction of short hydrogen bonds in proteins via machine learning method \| Scientific Reports - Nature.com Effective prediction of short hydrogen bonds in proteins via machine learning method \| Scientific Reports - Nature.com Effective prediction of short hydrogen bonds in proteins via machine learning method \| Scientific Reports Nature.com Read here	nmrlearner	Online News	0	01-10-2022 08:59 PM
Biophysical characterization of the homodimers of HomA and HomB, outer membrane proteins of Helicobacter pylori \| Scientific Reports - Nature.com Biophysical characterization of the homodimers of HomA and HomB, outer membrane proteins of Helicobacter pylori \| Scientific Reports - Nature.com Biophysical characterization of the homodimers of HomA and HomB, outer membrane proteins of Helicobacter pylori \| Scientific Reports Nature.com Read here	nmrlearner	Online News	0	12-31-2021 08:07 AM
Random sampling of the Protein Data Bank: RaSPDB \| Scientific Reports - Nature.com Random sampling of the Protein Data Bank: RaSPDB \| Scientific Reports - Nature.com Random sampling of the Protein Data Bank: RaSPDB \| Scientific Reports Nature.com Read here	nmrlearner	Online News	0	12-18-2021 07:26 AM
[NMR paper] DNP NMR spectroscopy reveals new structures, residues and interactions in wild spider silks. DNP NMR spectroscopy reveals new structures, residues and interactions in wild spider silks. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.rsc.org-images-entities-char_z_RSClogo.gif Related Articles DNP NMR spectroscopy reveals new structures, residues and interactions in wild spider silks. Chem Commun (Camb). 2019 Apr 16;55(32):4687-4690 Authors: Craig HC, Blamires SJ, Sani MA, Kasumovic MM, Rawal A, Hook JM Abstract DNP solid state NMR spectroscopy allows non-targeted analysis of wild spider silk...	nmrlearner	Journal club	0	05-09-2019 05:55 AM
Hydrogen/Deuterium Exchange Mass Spectrometry of HumanGreen Opsin Reveals a Conserved Pro-Pro Motif in Extracellular Loop2 of Monostable Visual G Protein-Coupled Receptors Hydrogen/Deuterium Exchange Mass Spectrometry of HumanGreen Opsin Reveals a Conserved Pro-Pro Motif in Extracellular Loop2 of Monostable Visual G Protein-Coupled Receptors http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00165/20170421/images/medium/bi-2017-001657_0007.gif Biochemistry DOI: 10.1021/acs.biochem.7b00165 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/V6KoR-Da50g More...	nmrlearner	Journal club	0	04-22-2017 07:21 AM
Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry - Nature.com Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry - Nature.com http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcSCXR38-W1skwr6nJyTpI7ekwp0MTCyjWVm3-nHyO5fN0ai5Hxu348VoeOV77NUFQBjMN6RfXbk Nature.com <img alt="" height="1" width="1"> Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry Nature.com We describe an integrated workflow that robustly identifies cross-links from endogenous protein complexes in human cellular lysates. Our approach is based on the application of mass spectrometry (MS)-cleavable cross-linkers,...	nmrlearner	Online News	0	09-29-2015 07:59 AM
[NMR paper] Identification of differential protein binding affinities in an atropisomeric pharmaceutical compound using non-covalent mass spectrometry, equilibrium dialysis and NMR. Identification of differential protein binding affinities in an atropisomeric pharmaceutical compound using non-covalent mass spectrometry, equilibrium dialysis and NMR. Related Articles Identification of differential protein binding affinities in an atropisomeric pharmaceutical compound using non-covalent mass spectrometry, equilibrium dialysis and NMR. Anal Chem. 2013 May 22; Authors: Maple HJ, Garlish RA, Whitcombe I, Hold A, Prosser CE, Ford D, Mackenzie H, Crosby J, Porter J, Taylor RJ, Crump MP Abstract Atropisomerism of...	nmrlearner	Journal club	0	05-24-2013 10:44 PM
[NMR900 blog] NMR paper in Nature Scientific Reports NMR paper in Nature Scientific Reports C.E. Norris, S.A. Quideau, S.M. Landhäusser, G.M. Bernard and R.E. Wasylishen, "Tracking Stable Isotope Enrichment in Tree Seedlings with Solid-State NMR Spectroscopy," Nature Scientific Reports 2 (2012) 719. http://dx.doi.org/10.1038/srep00719https://blogger.googleusercontent.com/tracker/8663203727601106205-993472665316978490?l=nmr900.blogspot.com Read complete story on NMR900 blog	nmrlearner	News from NMR blogs	0	10-17-2012 12:14 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off