Space Race: Inside a high-stakes experiment in protein crystallization - UAB News

		BioNMR > NMR community > Online News
Space Race: Inside a high-stakes experiment in protein crystallization - UAB News

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

04-13-2015, 09:11 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Space Race: Inside a high-stakes experiment in protein crystallization - UAB News

UAB News

Space Race: Inside a high-stakes experiment in protein crystallization
UAB News
(The other is nuclear magnetic resonance spectroscopy.) Crystallography starts with crystals â?? comprising hundreds of thousands of protein molecules, packed together like a three-dimensional wall of bricks. By bombarding a crystal with X-rays, and ...

Space Race: Inside a high-stakes experiment in protein crystallization - UAB News
More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Understanding protein cross talk inside cells could lead to new breast cancer ... - Daily News - Galveston County Understanding protein cross talk inside cells could lead to new breast cancer ... - Daily News - Galveston County <img alt="" height="1" width="1" /> Understanding protein cross talk inside cells could lead to new breast cancer ... Daily News - Galveston County We are making progress in treatment and better diagnostics with advanced mammogram screening and the more refined NMR breast imaging. Together these are beginning to make a difference. And there are new promising techniques for specifically ... and more » Read here	nmrlearner	Online News	0	10-02-2014 06:36 AM
Global Protein Crystallization & Crystallography (Ion-Exchange Chromatography ... - EIN News (press release) Global Protein Crystallization & Crystallography (Ion-Exchange Chromatography ... - EIN News (press release) <img alt="" height="1" width="1" /> Global Protein Crystallization & Crystallography (Ion-Exchange Chromatography ... EIN News (press release) Protein crystallization & crystallography are techniques that are used very frequently by researchers to understand the three-dimensional structure of a protein. The market for protein crystallization & crystallography is expected to grow at a high ... and more » Read here	nmrlearner	Online News	0	07-03-2014 06:13 PM
Structure of bacterial nanowire protein hints at secrets of conduction - Space Daily Structure of bacterial nanowire protein hints at secrets of conduction - Space Daily <img alt="" height="1" width="1" /> Structure of bacterial nanowire protein hints at secrets of conduction Space Daily But the protein by itself isn't enough to reveal how conduction works. Many pilin proteins work together to form a fiber, and Reardon and Mueller only had one. Nor did the researchers have the whole fiber to put into the NMR instrument. To get more ... Read here	nmrlearner	Online News	0	11-19-2013 11:35 AM
Simultaneous single-structure and bundle representation of protein NMR structures in torsion angle space Simultaneous single-structure and bundle representation of protein NMR structures in torsion angle space Abstract A method is introduced to represent an ensemble of conformers of a protein by a single structure in torsion angle space that lies closest to the averaged Cartesian coordinates while maintaining perfect covalent geometry and on average equal steric quality and an equally good fit to the experimental (e.g. NMR) data as the individual conformers of the ensemble. The single representative â??regmean structureâ?? is obtained by simulated annealing in torsion angle space with the...	nmrlearner	Journal club	0	02-25-2012 12:16 AM
[NMR paper] Multidimensional NMR spectroscopy for protein characterization and assignment inside cells. Multidimensional NMR spectroscopy for protein characterization and assignment inside cells. Related Articles Multidimensional NMR spectroscopy for protein characterization and assignment inside cells. J Am Chem Soc. 2005 Aug 10;127(31):10848-9 Authors: Reardon PN, Spicer LD High-field, heteronuclear NMR spectroscopy of biological macromolecules in native cellular environments is limited by the low concentrations present and the long data acquisition times needed for the experiments. Successful 1D and 2D heteronuclear NMR data have been...	nmrlearner	Journal club	0	12-01-2010 06:56 PM
[NMR paper] The race-specific elicitor AVR9 of the tomato pathogen Cladosporium fulvum: a cystine The race-specific elicitor AVR9 of the tomato pathogen Cladosporium fulvum: a cystine knot protein. Sequence-specific 1H NMR assignments, secondary structure and global fold of the protein. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles The race-specific elicitor AVR9 of the tomato pathogen Cladosporium fulvum: a cystine knot protein. Sequence-specific 1H NMR assignments, secondary structure and global fold of the protein. FEBS Lett. 1997 Mar 10;404(2-3):153-8 Authors: Vervoort...	nmrlearner	Journal club	0	08-22-2010 03:31 PM
[NMR paper] The race-specific elicitor AVR9 of the tomato pathogen Cladosporium fulvum: a cystine The race-specific elicitor AVR9 of the tomato pathogen Cladosporium fulvum: a cystine knot protein. Sequence-specific 1H NMR assignments, secondary structure and global fold of the protein. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles The race-specific elicitor AVR9 of the tomato pathogen Cladosporium fulvum: a cystine knot protein. Sequence-specific 1H NMR assignments, secondary structure and global fold of the protein. FEBS Lett. 1997 Mar 10;404(2-3):153-8 Authors: Vervoort...	nmrlearner	Journal club	0	08-22-2010 03:03 PM
[Stan NMR blog] Is every finite-dimensional Hilbert space a spin-space? Is every finite-dimensional Hilbert space a spin-space? Every linear operator on any finite Hilbert space can be generated from spin operators. More...	nmrlearner	News from NMR blogs	0	08-21-2010 06:14 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off