A solid-state NMR tool box for the investigation of ATP-fueled protein engines - ScienceDirect

		BioNMR > NMR community > Online News
A solid-state NMR tool box for the investigation of ATP-fueled protein engines - ScienceDirect

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

12-28-2023, 10:50 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

A solid-state NMR tool box for the investigation of ATP-fueled protein engines - ScienceDirect

A solid-state NMR tool box for the investigation of ATP-fueled protein engines - ScienceDirect

A solid-state NMR tool box for the investigation of ATP-fueled protein engines ScienceDirect Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Solid-state NMR – a complementary technique for protein framework characterization - ScienceDirect Solid-state NMR – a complementary technique for protein framework characterization - ScienceDirect Solid-state NMR – a complementary technique for protein framework characterization ScienceDirect Read here	nmrlearner	Online News	0	12-28-2023 10:50 PM
How does it really move? Recent progress in the investigation of protein nanosecond dynamics by NMR and simulation - ScienceDirect How does it really move? Recent progress in the investigation of protein nanosecond dynamics by NMR and simulation - ScienceDirect How does it really move? Recent progress in the investigation of protein nanosecond dynamics by NMR and simulation ScienceDirect Read here	nmrlearner	Online News	0	12-28-2023 10:50 PM
Advanced solid-state NMR techniques for characterization of membrane protein structure and dynamics: Application to ... - ScienceDirect Advanced solid-state NMR techniques for characterization of membrane protein structure and dynamics: Application to ... - ScienceDirect Advanced solid-state NMR techniques for characterization of membrane protein structure and dynamics: Application to ... ScienceDirect Read here	nmrlearner	Online News	0	12-28-2023 10:50 PM
[NMR paper] A solid-state NMR tool box for the investigation of ATP-fueled protein engines. A solid-state NMR tool box for the investigation of ATP-fueled protein engines. Related Articles A solid-state NMR tool box for the investigation of ATP-fueled protein engines. Prog Nucl Magn Reson Spectrosc. 2020 Apr;117:1-32 Authors: Wiegand T Abstract Motor proteins are involved in a variety of cellular processes. Their main purpose is to convert the chemical energy released during adenosine triphosphate (ATP) hydrolysis into mechanical work. In this review, solid-state Nuclear Magnetic Resonance (NMR) approaches are discussed...	nmrlearner	Journal club	0	05-31-2020 03:53 PM
[NMR paper] Solid-state NMR and EPR Spectroscopy of Mn(2+) -Substituted ATP-Fueled Protein Engines. Solid-state NMR and EPR Spectroscopy of Mn(2+) -Substituted ATP-Fueled Protein Engines. Related Articles Solid-state NMR and EPR Spectroscopy of Mn(2+) -Substituted ATP-Fueled Protein Engines. Angew Chem Int Ed Engl. 2017 Feb 13;: Authors: Wiegand T, Lacabanne D, Keller K, Cadalbert R, Lecoq L, Yulikov M, Terradot L, Jeschke G, Meier BH, Böckmann A Abstract Paramagnetic metal ions deliver structural information both in EPR and solid-state NMR experiments, offering a profitable synergetic approach to study bio-macromolecules. We...	nmrlearner	Journal club	0	02-14-2017 02:05 PM
[NMR paper] Cellular Solid-State NMR Investigation of a Membrane Protein Using Dynamic Nuclear Polarization. Cellular Solid-State NMR Investigation of a Membrane Protein Using Dynamic Nuclear Polarization. Related Articles Cellular Solid-State NMR Investigation of a Membrane Protein Using Dynamic Nuclear Polarization. Biochim Biophys Acta. 2014 Jul 10; Authors: Yamamoto K, Caporini MA, Im SC, Waskell L, Ramamoorthy A Abstract While an increasing number of structural biology studies successfully demonstrate the power of high-resolution structures and dynamics of membrane proteins in fully understanding their function, there is...	nmrlearner	Journal club	0	07-16-2014 10:46 AM
Cellular Solid-State NMR Investigation of a Membrane Protein Using Dynamic Nuclear Polarization Cellular Solid-State NMR Investigation of a Membrane Protein Using Dynamic Nuclear Polarization Publication date: Available online 11 July 2014 Source:Biochimica et Biophysica Acta (BBA) - Biomembranes</br> Author(s): Kazutoshi Yamamoto , Marc A. Caporini , Sang-Choul Im , Lucy Waskell , Ayyalusamy Ramamoorthy</br> While an increasing number of structural biology studies successfully demonstrate the power of high-resolution structures and dynamics of membrane proteins in fully understanding their function, there is considerable interest in developing NMR...	nmrlearner	Journal club	0	07-12-2014 04:28 AM
87Sr Solid-StateNMR as a StructurallySensitive Tool for the Investigation of Materials: AntiosteoporoticPharmaceuticals and Bioactive Glasses 87Sr Solid-StateNMR as a StructurallySensitive Tool for the Investigation of Materials: AntiosteoporoticPharmaceuticals and Bioactive Glasses Christian Bonhomme, Christel Gervais, Nicolas Folliet, Fre?de?rique Pourpoint, Cristina Coelho Diogo, Jonathan Lao, Edouard Jallot, Jose?phine Lacroix, Jean-Marie Nedelec, Dinu Iuga, John V. Hanna, Mark E. Smith, Ye Xiang, Jincheng Du and Danielle Laurencin http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja303505g/aop/images/medium/ja-2012-03505g_0001.gif Journal of the American Chemical Society...	nmrlearner	Journal club	0	07-19-2012 10:06 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off