Solid-state NMR spectroscopy based atomistic view of a membrane protein unfolding pathway - Nature.com

		BioNMR > NMR community > Online News
Solid-state NMR spectroscopy based atomistic view of a membrane protein unfolding pathway - Nature.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

07-24-2024, 08:25 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Solid-state NMR spectroscopy based atomistic view of a membrane protein unfolding pathway - Nature.com

Solid-state NMR spectroscopy based atomistic view of a membrane protein unfolding pathway - Nature.com

Solid-state NMR spectroscopy based atomistic view of a membrane protein unfolding pathway Nature.com Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Quantifying the thermodynamics of protein unfolding using 2D NMR spectroscopy \| Communications Chemistry - Nature.com Quantifying the thermodynamics of protein unfolding using 2D NMR spectroscopy \| Communications Chemistry - Nature.com Quantifying the thermodynamics of protein unfolding using 2D NMR spectroscopy \| Communications Chemistry Nature.com Read here	nmrlearner	Online News	0	05-30-2024 07:50 AM
[NMR paper] Probing the energy barriers and stages of membrane protein unfolding using solid-state NMR spectroscopy Probing the energy barriers and stages of membrane protein unfolding using solid-state NMR spectroscopy Understanding how the amino acid sequence dictates protein structure and defines its stability is a fundamental problem in molecular biology. It is especially challenging for membrane proteins that reside in the complex environment of a lipid bilayer. Here, we obtain an atomic-level picture of the thermally induced unfolding of a membrane-embedded ?-helical protein, human aquaporin 1, using solid-state nuclear magnetic resonance spectroscopy. Our data reveal the hierarchical two-step...	nmrlearner	Journal club	0	05-17-2024 11:00 PM
Solid-state NMR spectroscopy structure determination of a lipid-embedded heptahelical membrane protein - Nature.com Solid-state NMR spectroscopy structure determination of a lipid-embedded heptahelical membrane protein - Nature.com Solid-state NMR spectroscopy structure determination of a lipid-embedded heptahelical membrane protein Nature.com Read here	nmrlearner	Online News	0	02-19-2024 09:38 PM
Solid-state NMR spectroscopy based atomistic view of a membrane protein unfolding pathway - Nature.com Solid-state NMR spectroscopy based atomistic view of a membrane protein unfolding pathway - Nature.com Solid-state NMR spectroscopy based atomistic view of a membrane protein unfolding pathway Nature.com Read here	nmrlearner	Online News	0	12-28-2023 10:50 PM
Assignment and secondary structure of the YadA membrane protein by solid-state MAS NMR \| Scientific Reports - Nature.com Assignment and secondary structure of the YadA membrane protein by solid-state MAS NMR \| Scientific Reports - Nature.com Assignment and secondary structure of the YadA membrane protein by solid-state MAS NMR \| Scientific Reports Nature.com Read here	nmrlearner	Online News	0	12-28-2023 10:50 PM
Protein structure and folding pathway prediction based on remote ... - Nature.com Protein structure and folding pathway prediction based on remote ... - Nature.com Protein structure and folding pathway prediction based on remote ... Nature.com Read here	nmrlearner	Online News	0	03-05-2023 02:55 PM
[ASAP] An Atomistic Picture of Boron Oxide Catalysts for Oxidative Dehydrogenation Revealed by Ultrahigh Field 11B–17O Solid-State NMR Spectroscopy An Atomistic Picture of Boron Oxide Catalysts for Oxidative Dehydrogenation Revealed by Ultrahigh Field 11B–17O Solid-State NMR Spectroscopy Rick W. Dorn, Lesli O. Mark, Ivan Hung, Melissa C. Cendejas, Yijue Xu, Peter L. Gor’kov, Wenping Mao, Faysal Ibrahim, Zhehong Gan, Ive Hermans, and Aaron J. Rossini https://pubs.acs.org/cms/10.1021/jacs.2c08237/asset/images/medium/ja2c08237_0006.gif Journal of the American Chemical Society DOI: 10.1021/jacs.2c08237	nmrlearner	Journal club	0	10-11-2022 09:23 AM
[NMR paper] Area Per Lipid and Elastic Deformation of Membranes: Atomistic View From Solid-State Deuterium NMR Spectroscopy. Area Per Lipid and Elastic Deformation of Membranes: Atomistic View From Solid-State Deuterium NMR Spectroscopy. Related Articles Area Per Lipid and Elastic Deformation of Membranes: Atomistic View From Solid-State Deuterium NMR Spectroscopy. Biochim Biophys Acta. 2014 Jun 16; Authors: Kinnun JJ, Mallikarjunaiah KJ, Petrache HI, Brown MF Abstract This article reviews the application of solid-state (2)H nuclear magnetic resonance (NMR) spectroscopy for investigating the deformation of lipid bilayers at the atomistic level. For...	nmrlearner	Journal club	0	06-20-2014 08:14 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off