Shortening the Experiment Recording Time for Protein NMR - AZoM

		BioNMR > NMR community > Online News
Shortening the Experiment Recording Time for Protein NMR - AZoM

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

04-04-2019, 09:40 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,733

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Shortening the Experiment Recording Time for Protein NMR - AZoM

Shortening the Experiment Recording Time for Protein NMR - AZoM

Shortening the Experiment Recording Time for Protein NMR AZoMThe use of dynamic analysis or even backbone assignment can be extremely time-consuming when recording all of the essential NMR experiments for protein ...

Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Shortening the Experiment Recording Time for Protein NMR - AZoM Shortening the Experiment Recording Time for Protein NMR - AZoM Shortening the Experiment Recording Time for Protein NMR AZoMThe use of dynamic analysis or even backbone assignment can be extremely time-consuming when recording all of the essential NMR experiments for protein ... Read here	nmrlearner	Online News	0	01-07-2019 05:49 AM
[NMR paper] NMR supersequences with real-time homonuclear broadband decoupling: Sequential acquisition of protein and small molecule spectra in a single experiment NMR supersequences with real-time homonuclear broadband decoupling: Sequential acquisition of protein and small molecule spectra in a single experiment Publication date: December 2018 Source: Journal of Magnetic Resonance, Volume 297 Author(s): Veera Mohana Rao Kakita, Kavitha Rachineni, Mandar Bopardikar, Ramakrishna V. Hosur Abstract	nmrlearner	Journal club	0	11-25-2018 06:02 AM
Shortening the Experiment Recording Time for Protein NMR - AZoM Shortening the Experiment Recording Time for Protein NMR - AZoM http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcS133QvAP5M79KvwOrKO4MwGzlnyPdTedPq4cGVTtaeQj4mljlGX7yzXYQmyE7Vj-6zu_gixTc AZoM <img alt="" height="1" width="1"> Shortening the Experiment Recording Time for Protein NMR AZoM The use of dynamic analysis or even backbone assignment can be extremely time-consuming when recording all of the essential NMR experiments for protein structure measurements. The time used to record the entire experimental data required for protein ...	nmrlearner	Online News	0	06-15-2016 11:12 PM
A 3D time-shared NOESY experiment designed to provide optimal resolution for accurate assignment of NMR distance restraints in large proteins A 3D time-shared NOESY experiment designed to provide optimal resolution for accurate assignment of NMR distance restraints in large proteins Abstract Structure determination of proteins by solution NMR has become an established method, but challenges increase steeply with the size of proteins. Notably, spectral crowding and signal overlap impair the analysis of cross-peaks in NOESY spectra that provide distance restraints for structural models. An optimal spectral resolution can alleviate overlap but requires prohibitively long experimental time...	nmrlearner	Journal club	0	11-11-2014 11:57 AM
[NMR paper] A 3D time-shared NOESY experiment designed to provide optimal resolution for accurate assignment of NMR distance restraints in large proteins. A 3D time-shared NOESY experiment designed to provide optimal resolution for accurate assignment of NMR distance restraints in large proteins. Related Articles A 3D time-shared NOESY experiment designed to provide optimal resolution for accurate assignment of NMR distance restraints in large proteins. J Biomol NMR. 2014 Nov 9; Authors: Mishra SH, Harden BJ, Frueh DP Abstract Structure determination of proteins by solution NMR has become an established method, but challenges increase steeply with the size of proteins. Notably,...	nmrlearner	Journal club	0	11-10-2014 10:59 PM
Analysis of Moisture, Fat and Protein in Cheese Products - Azom.com Analysis of Moisture, Fat and Protein in Cheese Products - Azom.com <img alt="" height="1" width="1" /> Analysis of Moisture, Fat and Protein in Cheese Products Azom.com The SMART Trac II from CEM enables the testing of moisture and fat using TD-NMR coupled with microwave drying, which has been established as the most accurate rapid method available. The study of the entire sample on a molecular level not just the ... and more » Read here	nmrlearner	Online News	0	03-07-2014 05:41 AM
Understanding Protein Crystallization Growth at the University of ... - Azom.com Understanding Protein Crystallization Growth at the University of ... - Azom.com http://www.bionmr.com//nt2.ggpht.com/news/tbn/YvGbSkpEZpDV7M/6.jpg Azom.com <img alt="" height="1" width="1" /> Understanding Protein Crystallization Growth at the University of ... Azom.com Understanding Protein Crystallization Growth at the University of Leeds using a ... Mass Spectrometers · Nuclear Magnetic Resonance Spectroscopy (NMR) ...	nmrlearner	Online News	0	06-28-2012 07:54 AM
Simultaneous detection of amide and methyl correlations using a time shared NMR experiment: application to binding epitope mapping Simultaneous detection of amide and methyl correlations using a time shared NMR experiment: application to binding epitope mapping Peter Würtz, Olli Aitio, Maarit Hellman and Perttu Permi Journal of Biomolecular NMR; 2007; 39(2) pp 97 - 105 Abstract: Simultaneous recording of different NMR parameters is an efficient way to reduce the overall experimental time and speed up structural studies of biological macromolecules. This can especially be beneficial in the case of fast NMR-based drug screening applications or for collecting NOE restraints, where prohibitively long data collection...	stewart	Journal club	0	08-05-2008 01:41 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off