The SARS-CoV-2 nucleocapsid protein: its role in the viral life cycle ... - Virology Journal

		BioNMR > NMR community > Online News
The SARS-CoV-2 nucleocapsid protein: its role in the viral life cycle ... - Virology Journal

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

01-12-2023, 02:17 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

The SARS-CoV-2 nucleocapsid protein: its role in the viral life cycle ... - Virology Journal

The SARS-CoV-2 nucleocapsid protein: its role in the viral life cycle ... - Virology Journal

The SARS-CoV-2 nucleocapsid protein: its role in the viral life cycle ... Virology Journal Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Nonstructural Protein 1 of Variant PEDV Plays a Key Role in Escaping Replication Restriction by Complement C3 \| Journal of Virology - American Society for Microbiology Nonstructural Protein 1 of Variant PEDV Plays a Key Role in Escaping Replication Restriction by Complement C3 \| Journal of Virology - American Society for Microbiology Nonstructural Protein 1 of Variant PEDV Plays a Key Role in Escaping Replication Restriction by Complement C3 \| Journal of Virology American Society for Microbiology Read here	nmrlearner	Online News	0	09-30-2022 04:26 AM
A Structurally Conserved RNA Element within SARS-CoV-2 ORF1a RNA and S mRNA Regulates Translation in Response to Viral S Protein-Induced Signaling in Human Lung Cells \| Journal of Virology - Journal of Virology A Structurally Conserved RNA Element within SARS-CoV-2 ORF1a RNA and S mRNA Regulates Translation in Response to Viral S Protein-Induced Signaling in Human Lung Cells \| Journal of Virology - Journal of Virology A Structurally Conserved RNA Element within SARS-CoV-2 ORF1a RNA and S mRNA Regulates Translation in Response to Viral S Protein-Induced Signaling in Human Lung Cells \| Journal of Virology Journal of Virology Read here	nmrlearner	Online News	0	01-26-2022 10:54 PM
Architecture and self-assembly of the SARS-CoV-2 nucleocapsid protein - Wiley Architecture and self-assembly of the SARS-CoV-2 nucleocapsid protein - Wiley Architecture and self-assembly of the SARS-CoV-2 nucleocapsid protein Wiley Read here	nmrlearner	Online News	0	08-08-2020 10:56 PM
A Highly Conserved Leucine in Mammarenavirus Matrix Z Protein Is Required for Z Interaction with the Virus L ... - Journal of Virology A Highly Conserved Leucine in Mammarenavirus Matrix Z Protein Is Required for Z Interaction with the Virus L ... - Journal of Virology <img alt="" height="1" width="1"> A Highly Conserved Leucine in Mammarenavirus Matrix Z Protein Is Required for Z Interaction with the Virus L ... Journal of Virology To gain a better understanding of how the Z protein exerts its several different functions, we investigated the interaction between Z and viral polymerase L protein using the prototypic mammarenavirus, lymphocytic choriomeningitis virus (LCMV). We ... Read here	nmrlearner	Online News	0	05-15-2018 03:38 PM
Mutations in the Basic Region of the Mason-Pfizer Monkey Virus Nucleocapsid Protein Affect Reverse Transcription ... - Journal of Virology Mutations in the Basic Region of the Mason-Pfizer Monkey Virus Nucleocapsid Protein Affect Reverse Transcription ... - Journal of Virology <img alt="" height="1" width="1"> Mutations in the Basic Region of the Mason-Pfizer Monkey Virus Nucleocapsid Protein Affect Reverse Transcription ... Journal of Virology Importantly, in addition to gRNA incorporation, this basic region (KNKEK) at the N terminus of the nucleocapsid protein is crucial for the onset of reverse transcription. Mutations that change the positive charge of the region to a negative one ... and more » Read here	nmrlearner	Online News	0	04-28-2018 03:16 PM
The Vaccinia Virus H3 Envelope Protein, a Major Target of Neutralizing Antibodies, Exhibits a Glycosyltransferase ... - Journal of Virology The Vaccinia Virus H3 Envelope Protein, a Major Target of Neutralizing Antibodies, Exhibits a Glycosyltransferase ... - Journal of Virology <img alt="" height="1" width="1"> The Vaccinia Virus H3 Envelope Protein, a Major Target of Neutralizing Antibodies, Exhibits a Glycosyltransferase ... Journal of Virology Like glycosyltransferases, H3 binds UDP-glucose, as shown by saturation transfer difference (STD) nuclear magnetic resonance (NMR) spectroscopy, and this binding requires Mg2+. Mutation of the glycosyltransferase-like metal ion binding motif in H3 ... Read here	nmrlearner	Online News	0	04-30-2016 09:26 AM
pUL69 of Human Cytomegalovirus Recruits the Cellular Protein Arginine ... - Journal of Virology pUL69 of Human Cytomegalovirus Recruits the Cellular Protein Arginine ... - Journal of Virology <img alt="" height="1" width="1"> pUL69 of Human Cytomegalovirus Recruits the Cellular Protein Arginine ... Journal of Virology Remarkably, nuclear magnetic resonance (NMR) analyses revealed the same α-helical structures for pUL69 sequences encoding either the wild type R1/R2 boxes or a UAP56/PRMT6 binding-deficient derivative, thereby excluding the possibility that R/A ... Read here	nmrlearner	Online News	0	08-20-2015 05:44 AM
Determinants of Dengue Virus NS4A Protein Oligomerization - Journal of Virology Determinants of Dengue Virus NS4A Protein Oligomerization - Journal of Virology <img alt="" height="1" width="1"> Determinants of Dengue Virus NS4A Protein Oligomerization Journal of Virology Nuclear magnetic resonance (NMR) analysis of NS4A amino acids 17 to 80 suggests that residues L31, L52, E53, G66, and G67 could participate in oligomerization. Ala substitution for 15 flavivirus conserved NS4A residues revealed that these amino acids ... Read here	nmrlearner	Online News	0	05-16-2015 01:45 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off