Revealing dynamic protein complexes with NMR: an interview with Elisar Barbar - News-Medical.net

		BioNMR > NMR community > Online News
Revealing dynamic protein complexes with NMR: an interview with Elisar Barbar - News-Medical.net

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

04-04-2019, 09:40 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Revealing dynamic protein complexes with NMR: an interview with Elisar Barbar - News-Medical.net

Revealing dynamic protein complexes with NMR: an interview with Elisar Barbar - News-Medical.net

Revealing dynamic protein complexes with NMR: an interview with Elisar Barbar News-Medical.netMost proteins are involved in interactions with one or a few functional ligands, but some proteins, like light chain 8 (LC8), have numerous binding partners.

Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Revealing dynamic protein complexes with NMR: an interview with Elisar Barbar - News-Medical.net Revealing dynamic protein complexes with NMR: an interview with Elisar Barbar - News-Medical.net Revealing dynamic protein complexes with NMR: an interview with Elisar Barbar News-Medical.netMost proteins are involved in interactions with one or a few functional ligands, but some proteins, like light chain 8 (LC8), have numerous binding partners. Read here	nmrlearner	Online News	0	01-07-2019 05:49 AM
Using NMR to investigate intrinsically disordered proteins: an interview with Dr Isabella Felli - News-Medical.net Using NMR to investigate intrinsically disordered proteins: an interview with Dr Isabella Felli - News-Medical.net Using NMR to investigate intrinsically disordered proteins: an interview with Dr Isabella Felli News-Medical.netIDPs” is now a widely used acronym that stands for “intrinsically disordered proteins.” It is the term generally used by the scientific community to refer to a wide ... Read here	nmrlearner	Online News	0	01-07-2019 05:49 AM
Using NMR to investigate intrinsically disordered proteins: an interview with Dr Isabella Felli - News-Medical.net Using NMR to investigate intrinsically disordered proteins: an interview with Dr Isabella Felli - News-Medical.net <img alt="" height="1" width="1"> Using NMR to investigate intrinsically disordered proteins: an interview with Dr Isabella Felli News-Medical.net This mainstream understanding kept the scientific community distracted from also focusing on a lot of other important proteins, such as the more flexible ones. We all know how NMR spectroscopy is not only used to look at structural information, but can ... and more » Read here	nmrlearner	Online News	0	07-01-2016 03:06 AM
Revealing dynamic protein complexes with NMR: an interview with Elisar Barbar - News-Medical.net Revealing dynamic protein complexes with NMR: an interview with Elisar Barbar - News-Medical.net http://www.bionmr.com//t3.gstatic.com/images?q=tbn:ANd9GcQAUeftlGgK3d5S-pqiIVCQmBJHU9ZDe44hgJ0jUOWMmdjhcV1TI5zGgWu0KacYldtmmtTupMSd News-Medical.net <img alt="" height="1" width="1"> Revealing dynamic protein complexes with NMR: an interview with Elisar Barbar News-Medical.net In my lab, we focus on understanding structure, assembly and regulation of the LC8 protein interaction network, the array of LC8 interactions with diverse partners which affect multiple cellular functions in...	nmrlearner	Online News	0	02-18-2016 08:10 PM
Unlocking intrinsically disordered proteins: an interview with Peter Wright - News-Medical.net Unlocking intrinsically disordered proteins: an interview with Peter Wright - News-Medical.net http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcQ0HUfsDqvUbSqQDsGm-tqskmSpF8YqwwODycyDO5HBNq0_aUwY-DX3k5_NRC5gMJjgYy2R33c News-Medical.net <img alt="" height="1" width="1"> Unlocking intrinsically disordered proteins: an interview with Peter Wright News-Medical.net I'm a professor in the Department of Integrative Structural and Computational Biology at The Scripps Research Institute. I have been performing NMR research on proteins for nearly 40 years. In very general terms, my...	nmrlearner	Online News	0	02-11-2016 10:30 PM
NMR in cancer research: an interview with Andy Byrd - News-Medical.net <img alt="" height="1" width="1"> NMR in cancer research: an interview with Andy Byrd News-Medical.net I specialize in nuclear magnetic resonance (NMR) applied to biological problems. Our lab is very interested in studying mammalian proteins, particularly systems involved in cancer, in order to try to understand mechanisms to provide that information ... NMR in cancer research: an interview with Andy Byrd - News-Medical.net More...	nmrlearner	Online News	0	01-27-2015 09:48 AM
Using NMR to study protein motion: an interview with Fabien Ferrage, Ã?cole ... - News-Medical.net Using NMR to study protein motion: an interview with Fabien Ferrage, Ã?cole ... - News-Medical.net <img alt="" height="1" width="1" /> Using NMR to study protein motion: an interview with Fabien Ferrage, Ã?cole ... News-Medical.net We have first applied the new technique to a model protein ubiquitin, which has been studied by NMR for 20 to 25 years and been very well characterized by various methods, including its structure and motions. What we have seen using this apparatus to ... and more » Read here	nmrlearner	Online News	0	08-19-2014 11:21 AM
Dr. Elisar Barbar, Oregon State University The following information about research projects in Dr. Elisar Barbar lab was found on her website. ****************************************************************** http://science.oregonstate.edu/%7ebarbare/BarbarLab.gif Research Interests:The Dynein Motor Protein Complex Protein Structure and Dynamics Protein Folding Protein-Protein Interactions The major research focus of my lab is the structural biology and assembly of cytoplasmic dynein, a principal motor for minus end directed transport along microtubules. Cytoplasmic dynein is a large protein complex composed of two...	nmrlearner	A test forum	0	03-17-2005 04:27 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off