BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > Online News
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 10-08-2022, 07:03 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,732
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Retrospective study for the universal applicability of the residue-based linear free energy relationship in the two-state exchange of protein molecules | Scientific Reports - Nature.com

Retrospective study for the universal applicability of the residue-based linear free energy relationship in the two-state exchange of protein molecules | Scientific Reports - Nature.com

Retrospective study for the universal applicability of the residue-based linear free energy relationship in the two-state exchange of protein molecules | Scientific Reports Nature.com Read here
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
S-Pred: protein structural property prediction using MSA transformer | Scientific Reports - Nature.com
S-Pred: protein structural property prediction using MSA transformer | Scientific Reports Nature.com S-Pred: protein structural property prediction using MSA transformer | Scientific Reports - Nature.com More...
nmrlearner Online News 0 08-17-2022 06:05 PM
AlphaFold2 models indicate that protein sequence determines both structure and dynamics | Scientific Reports - Nature.com
AlphaFold2 models indicate that protein sequence determines both structure and dynamics | Scientific Reports - Nature.com AlphaFold2 models indicate that protein sequence determines both structure and dynamics | Scientific Reports Nature.com Read here
nmrlearner Online News 0 08-11-2022 01:49 PM
Role of a bacterial glycolipid in Sec-independent membrane protein insertion | Scientific Reports - Nature.com
Role of a bacterial glycolipid in Sec-independent membrane protein insertion | Scientific Reports - Nature.com Role of a bacterial glycolipid in Sec-independent membrane protein insertion | Scientific Reports Nature.com Read here
nmrlearner Online News 0 07-18-2022 03:28 PM
The time-zero HSQC method improves the linear free energy relationship of a polypeptide chain through the accurate measurement of residue-specific equilibrium constants
The time-zero HSQC method improves the linear free energy relationship of a polypeptide chain through the accurate measurement of residue-specific equilibrium constants Abstract EXSY (exchange spectroscopy) NMR provides the residue-specific equilibrium constants, K, and residue-specific kinetic rate constants, k, of a polypeptide chain in a two-state exchange in the slow exchange regime. A linear free energy relationship (LFER) discovered in a log k versus log K plot is considered to be a physicochemical basis for smooth folding and conformational...
nmrlearner Journal club 0 06-14-2022 08:15 PM
A database of calculated solution parameters for the AlphaFold predicted protein structures | Scientific Reports - Nature.com
A database of calculated solution parameters for the AlphaFold predicted protein structures | Scientific Reports - Nature.com A database of calculated solution parameters for the AlphaFold predicted protein structures | Scientific Reports Nature.com Read here
nmrlearner Online News 0 05-05-2022 11:49 PM
Random sampling of the Protein Data Bank: RaSPDB | Scientific Reports - Nature.com
Random sampling of the Protein Data Bank: RaSPDB | Scientific Reports - Nature.com Random sampling of the Protein Data Bank: RaSPDB | Scientific Reports Nature.com Read here
nmrlearner Online News 0 12-18-2021 07:26 AM
[NMR paper] Mapping the energy landscape of protein-ligand binding via linear free energy relationships determined by protein NMR relaxation dispersion
Mapping the energy landscape of protein-ligand binding via linear free energy relationships determined by protein NMR relaxation dispersion Biochemical signaling is mediated by complexes between macromolecular receptors and their ligands, with the duration of the signal being directly related to the lifetime of the ligand-receptor complex. In the field of drug design, the recognition that drug efficacy in vivo depends on the lifetime of the drug-protein complex has spawned the concept of designing drugs with particular binding kinetics. To advance this field it is critical to investigate...
nmrlearner Journal club 0 08-31-2021 10:53 AM
[NMR900 blog] NMR paper in Nature Scientific Reports
NMR paper in Nature Scientific Reports C.E. Norris, S.A. Quideau, S.M. Landhäusser, G.M. Bernard and R.E. Wasylishen, "Tracking Stable Isotope Enrichment in Tree Seedlings with Solid-State NMR Spectroscopy," Nature Scientific Reports 2 (2012) 719. http://dx.doi.org/10.1038/srep00719https://blogger.googleusercontent.com/tracker/8663203727601106205-993472665316978490?l=nmr900.blogspot.com Read complete story on NMR900 blog
nmrlearner News from NMR blogs 0 10-17-2012 12:14 AM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 07:48 AM.


Map