Researchers Develop Improved Method for Modeling Protein Complexes via Crosslinking MS - GenomeWeb

		BioNMR > NMR community > Online News
Researchers Develop Improved Method for Modeling Protein Complexes via Crosslinking MS - GenomeWeb

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

04-30-2016, 09:26 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Researchers Develop Improved Method for Modeling Protein Complexes via Crosslinking MS - GenomeWeb

Researchers Develop Improved Method for Modeling Protein Complexes via Crosslinking MS - GenomeWeb

Researchers Develop Improved Method for Modeling Protein Complexes via Crosslinking MS
GenomeWeb
Pasteur Institute researcher Michael Nilges, senior author on the paper, previously tackled a similar problem with using NMR data for elucidating the structures of small proteins, and, Beck said, here Nilges and his co-authors adopted that approach to ...

Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
UK Scientists Demonstrate Highly Detailed Two-Dimensional Mass Spec Method on ... - GenomeWeb <img alt="" height="1" width="1"> UK Scientists Demonstrate Highly Detailed Two-Dimensional Mass Spec Method on ... GenomeWeb The 2DMS technique was inspired by two-dimensional nuclear magnetic resonance more than 30 years ago. "In multidimensional NMR, what they do is modulate a signal and transfer that modulation and measure the signal itself," O'Connor said. "It has a ... UK Scientists Demonstrate Highly Detailed Two-Dimensional Mass Spec Method on ... - GenomeWeb More...	nmrlearner	Online News	0	01-11-2016 03:57 PM
COMPASS method points researchers to protein structures - Phys.Org http://www.bionmr.com//t3.gstatic.com/images?q=tbn:ANd9GcRmBPZswgOKAIYlftnfaGoIXYDZ46iT_PHYA8yPYECJHv4xy3f7fZOhLoEUjCWbmmQIzk5wRz7q Phys.Org <img alt="" height="1" width="1"> COMPASS method points researchers to protein structures Phys.Org Graduate student Joseph Courtney and chemistry professor Chad Rienstra developed a method to quickly and reliably determine a proteins intricately folded structure Credit: L. Brian Stauffer. Searching for the precise, complexly folded three-dimensional ... and more » COMPASS method points researchers to protein structures - Phys.Org	nmrlearner	Online News	0	10-16-2015 12:49 AM
Researchers develop novel strategy in fight against cancer - News-Medical.net <img alt="" height="1" width="1"> Researchers develop novel strategy in fight against cancer News-Medical.net ... of chromosomes, which leads to cancer. The researchers determined the three-dimensional structures of FAT10 using the state-of-the-art nuclear magnetic resonance (NMR) spectroscopy, and further examined the relationship between the two proteins. Researchers develop novel strategy in fight against cancer - News-Medical.net More...	nmrlearner	Online News	0	02-16-2015 01:34 AM
Researchers find new method to measure modified protein structures in ... - News-Medical.net <img alt="" height="1" width="1" /> Researchers find new method to measure modified protein structures in ... News-Medical.net Although there is a series of techniques to study structurally modified proteins, such as x-ray crystallography, nuclear magnetic resonance spectroscopy and other spectroscopic techniques, they cannot be used to analyse complex biological samples. Researchers find new method to measure modified protein structures in ... - News-Medical.net More...	nmrlearner	Online News	0	09-16-2014 08:38 PM
UC San Diego Chemists Develop Reversible Method of Tagging Proteins - HealthCanal.com UC San Diego Chemists Develop Reversible Method of Tagging Proteins - HealthCanal.com http://www.bionmr.com//nt3.ggpht.com/news/tbn/gyUQSzupOZCR1M/6.jpg R & D Magazine <img alt="" height="1" width="1" /> UC San Diego Chemists Develop Reversible Method of Tagging Proteins HealthCanal.com Subsequent reattachment of a fatty acid analogue reconstituted the protein complex to its natural state. By repeating the process again and again, while examining the molecular changes in the fatty acid with nuclear magnetic spectroscopy, or NMR ... Technology Enables Reversible, Repeatable Protein...	nmrlearner	Online News	0	10-17-2012 12:14 AM
Chemists develop reversible method of tagging proteins - Eureka! Science News Chemists develop reversible method of tagging proteins - Eureka! Science News <img alt="" height="1" width="1" /> Chemists develop reversible method of tagging proteins Eureka! Science News Subsequent reattachment of a fatty acid analogue reconstituted the protein complex to its natural state. By repeating the process again and again, while examining the molecular changes in the fatty acid with nuclear magnetic spectroscopy, or NMR ... and more » Read here	nmrlearner	Online News	0	09-17-2012 02:05 AM
Researchers develop way to strengthen proteins with polymers - R & D Magazine Researchers develop way to strengthen proteins with polymers - R & D Magazine http://www.bionmr.com//nt1.ggpht.com/news/tbn/1e8ZLQCvJy_rwM/6.jpg Azom.com <img alt="" height="1" width="1" /> Researchers develop way to strengthen proteins with polymers R & D Magazine Proteins are widely used as drugsâ??insulin for diabetics is the best known ... next week of a new 0.75-mm solid state nuclear magnetic resonance (NMR) probe. Polymers Can be Used to Stabilize ProteinsAzom.com	nmrlearner	Online News	0	06-13-2012 11:34 AM
[NMR tweet] Researchers develop nuclear magnetic resonance with no magnets http://bit.ly/lalnI9 Researchers develop nuclear magnetic resonance with no magnets http://bit.ly/lalnI9 Published by HIRE_Magazine (Hospital Imaging EU) on 2011-05-20T10:05:55Z Source: Twitter	nmrlearner	Twitter NMR	0	05-20-2011 10:13 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off