Repairing oxidized proteins in the bacterial envelope using respiratory chain ... - Nature.com

		BioNMR > NMR community > Online News
Repairing oxidized proteins in the bacterial envelope using respiratory chain ... - Nature.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

12-07-2015, 06:38 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Repairing oxidized proteins in the bacterial envelope using respiratory chain ... - Nature.com

Repairing oxidized proteins in the bacterial envelope using respiratory chain ... - Nature.com

Nature.com

Repairing oxidized proteins in the bacterial envelope using respiratory chain ...
Nature.com
The reactive species of oxygen and chlorine damage cellular components, potentially leading to cell death. In proteins, the sulfur-containing amino acid methionine is converted to methionine sulfoxide, which can cause a loss of biological activity. To ...

Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Salk scientists uncover new clues to repairing an injured spinal cord - ScienceBlog.com (blog) <img alt="" height="1" width="1" /> Salk scientists uncover new clues to repairing an injured spinal cord ScienceBlog.com (blog) By studying the configurations of the proteins in solutions using nuclear magnetic resonance (NMR) technology, the researchers found that the growth-promoting p45 could disrupt the p75 pairing. â??For reasons that are not understood, when p45 comes in, ... Salk scientists uncover new clues to repairing an injured spinal cord - ScienceBlog.com (blog) More...	nmrlearner	Online News	0	08-12-2014 06:25 PM
Salk scientists uncover new clues to repairing an injured spinal cord - EurekAlert (press release) <img alt="" height="1" width="1" /> Salk scientists uncover new clues to repairing an injured spinal cord EurekAlert (press release) By studying the configurations of the proteins in solutions using nuclear magnetic resonance (NMR) technology, the researchers found that the growth-promoting p45 could disrupt the p75 pairing. "For reasons that are not understood, when p45 comes in, ... and more » Salk scientists uncover new clues to repairing an injured spinal cord - EurekAlert (press release) More...	nmrlearner	Online News	0	08-06-2014 07:59 AM
Protein–protein interaction in Rhodothermus marinus respiratory chain studied by NMR spectroscopy Protein–protein interaction in Rhodothermus marinus respiratory chain studied by NMR spectroscopy Publication date: July 2014 Source:Biochimica et Biophysica Acta (BBA) - Bioenergetics, Volume 1837, Supplement</br> Author(s): Filipa Calisto , Patricia N. Refojo , Miguel Teixeira , Ricardo O. Louro , Manuela M. Pereira</br> </br></br> </br></br> More...	nmrlearner	Journal club	0	06-26-2014 08:53 AM
Newly Discovered Molecule Cuts Bacterial Proteins Short - The Biological SCENE <img alt="" height="1" width="1" /> Newly Discovered Molecule Cuts Bacterial Proteins Short The Biological SCENE With additional separations, they isolated the active compound and determined the structure using nuclear magnetic resonance spectroscopy. The compound included a collage of functional groups, but its unique feature was an orthoformate moietyâ??a trio ... Newly Discovered Molecule Cuts Bacterial Proteins Short - The Biological SCENE More...	nmrlearner	Online News	0	08-09-2013 04:40 AM
[NMR paper] Study of ion translocation by respiratory complex I. A new insight using (23)Na NMR spectroscopy. Study of ion translocation by respiratory complex I. A new insight using (23)Na NMR spectroscopy. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Study of ion translocation by respiratory complex I. A new insight using (23)Na NMR spectroscopy. Biochim Biophys Acta. 2012 Oct;1817(10):1810-6 Authors: Batista AP, Marreiros BC, Louro RO, Pereira MM Abstract The research on complex I has gained recently a new enthusiasm, especially after the resolution...	nmrlearner	Journal club	0	05-04-2013 09:18 PM
‘q-titration’ of long-chain and short-chain lipids differentiates between structured and mobile residues of membrane proteins studied in bicelles by solution NMR spectroscopy ‘q-titration’ of long-chain and short-chain lipids differentiates between structured and mobile residues of membrane proteins studied in bicelles by solution NMR spectroscopy Publication year: 2011 Source: Journal of Magnetic Resonance, Available online 25 October 2011</br> Woo SungSon, Sang HoPark, Henry J.Nothnagel, George J.Lu, Yan*Wang, ...</br> ‘q-titration’ refers to the systematic comparison of signal intensities in solution NMR spectra of uniformlyN labeled membrane proteins solubilized in micelles and isotropic bicelles as a function of the molar ratios (q) of the...	nmrlearner	Journal club	0	10-26-2011 11:25 AM
[NMR paper] Conformational study of fragments of envelope proteins (gp120: 254-274 and gp41: 519- Conformational study of fragments of envelope proteins (gp120: 254-274 and gp41: 519-541) of HIV-1 by NMR and MD simulations. Related Articles Conformational study of fragments of envelope proteins (gp120: 254-274 and gp41: 519-541) of HIV-1 by NMR and MD simulations. J Pept Sci. 2004 Jun;10(6):363-80 Authors: Kanyalkar M, Srivastava S, Saran A, Coutinho E The envelope proteins, gp 120 and gp41 of HIV-1, play a crucial role in receptor (CD4+ lymphocytes) binding and membrane fusion. The fragment 254-274 of gp120 is conserved in all strains of...	nmrlearner	Journal club	0	11-24-2010 09:51 PM
[NMR paper] Comparison of backbone and tryptophan side-chain dynamics of reduced and oxidized Esc Comparison of backbone and tryptophan side-chain dynamics of reduced and oxidized Escherichia coli thioredoxin using 15N NMR relaxation measurements. Related Articles Comparison of backbone and tryptophan side-chain dynamics of reduced and oxidized Escherichia coli thioredoxin using 15N NMR relaxation measurements. Biochemistry. 1993 Jan 19;32(2):426-35 Authors: Stone MJ, Chandrasekhar K, Holmgren A, Wright PE, Dyson HJ The backbone and tryptophan side-chain dynamics of both the reduced and oxidized forms of uniformly 15N-labeled Escherichia...	nmrlearner	Journal club	0	08-21-2010 11:53 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off