Read the paper: Highly accurate protein structure prediction for the human proteome - Nature.com

		BioNMR > NMR community > Online News
Read the paper: Highly accurate protein structure prediction for the human proteome - Nature.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-19-2021, 09:50 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,734

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Read the paper: Highly accurate protein structure prediction for the human proteome - Nature.com

Read the paper: Highly accurate protein structure prediction for the human proteome - Nature.com

Read the paper: Highly accurate protein structure prediction for the human proteome Nature.com Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Function follows form: Predicted protein structures for human proteome now - BioWorld Online Function follows form: Predicted protein structures for human proteome now - BioWorld Online Function follows form: Predicted protein structures for human proteome now BioWorld Online Read here	nmrlearner	Online News	0	07-24-2021 01:15 AM
Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry - Nature.com Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry - Nature.com http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcSCXR38-W1skwr6nJyTpI7ekwp0MTCyjWVm3-nHyO5fN0ai5Hxu348VoeOV77NUFQBjMN6RfXbk Nature.com <img alt="" height="1" width="1"> Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry Nature.com We describe an integrated workflow that robustly identifies cross-links from endogenous protein complexes in human cellular lysates. Our approach is based on the application of mass spectrometry (MS)-cleavable cross-linkers,...	nmrlearner	Online News	0	09-29-2015 07:59 AM
Robust and highly accurate automatic NOESY assignment and structure determination with Rosetta Robust and highly accurate automatic NOESY assignment and structure determination with Rosetta Abstract We have developed a novel and robust approach for automatic and unsupervised simultaneous nuclear Overhauser effect (NOE) assignment and structure determination within the CS-Rosetta framework. Starting from unassigned peak lists and chemical shift assignments, autoNOE-Rosetta determines NOE cross-peak assignments and generates structural models. The approach tolerates incomplete and raw NOE peak lists as well as incomplete or partially...	nmrlearner	Journal club	0	06-19-2014 10:21 PM
Two highly detailed maps of the human proteome released at same time Two highly detailed maps of the human proteome released at same time http://www.spectroscopynow.com/common/images/thumbnails/146483f269e.jpgTwo independent research collaborations have released highly detailed maps of the human proteome in the same publication, identifying a high proportion of the proteins encoded by the human genome. More...	nmrlearner	News from NMR blogs	0	05-29-2014 09:35 PM
[NMR900 blog] NMR paper in Nature Methods NMR paper in Nature Methods S. Wang, R.A. Munro, L. Shi, I. Kawamura, T. Okitsu, A. Wada, S.-Y. Kim, K.-H. Jung, L.S. Brown and V. Ladizhansky, "Solid-state NMR spectroscopy structure determination of a lipid-embedded heptahelical membrane protein,"Nature Methods (2013) online. http://dx.doi.org/10.1038/nmeth.2635 "Research May Lead to New Drugs for Heart Disease, Other Ailments" September 09, 2013 - News Release, University of Guelph http://www.uoguelph.ca/news/2013/09/research_may_le.html Read complete story on NMR900 blog	nmrlearner	News from NMR blogs	0	09-10-2013 08:00 AM
[NMR900 blog] NMR paper in Nature Chemistry NMR paper in Nature Chemistry V.N. Vukotic, K.J. Harris, K. Zhu, R.W. Schurko and S.J. Loeb, "Metal–organic frameworks with dynamic interlocked components," Nature Chemistry (2012) online. http://dx.doi.org/10.1038/nchem.1354https://blogger.googleusercontent.com/tracker/8663203727601106205-6370182279932996927?l=nmr900.blogspot.com Read complete story on NMR900 blog	nmrlearner	News from NMR blogs	0	05-15-2012 06:40 PM
[NMR900 blog] NMR paper in Nature NMR paper in Nature G. Bouvignies, P. Vallurupalli, D.F. Hansen, B.E. Correia, O. Lange, A. Bah, R.M. Vernon, F.W. Dahlquist, D. Baker & L.E. Kay, "Solution structure of a minor and transiently formed state of a T4 lysozyme mutant," Nature 477 (2011) 111–114. http://dx.doi.org/10.1038/nature10349https://blogger.googleusercontent.com/tracker/8663203727601106205-5646954509437191595?l=nmr900.blogspot.com Read complete story on NMR900 blog	nmrlearner	News from NMR blogs	0	09-10-2011 08:52 PM
NMR paper in Nature NMR paper in Nature A.M. Ruschak, T.L. Religa, S. Breuer, S. Witt and L.E. Kay, "The proteasome antechamber maintains substrates in an unfolded state," Nature 467 (2010) 868–871. http://dx.doi.org/10.1038/nature09444 https://blogger.googleusercontent.com/tracker/8663203727601106205-6883737347430659051?l=nmr900.blogspot.com Read complete story on NMR900 blog	nmrlearner	Journal club	0	10-14-2010 05:01 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off