PSC's Bridges Helps Scientists Understand Monkey Protein that Confers Immunity to HIV - HPCwire

		BioNMR > NMR community > Online News
PSC's Bridges Helps Scientists Understand Monkey Protein that Confers Immunity to HIV - HPCwire

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

11-25-2018, 06:02 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

PSC's Bridges Helps Scientists Understand Monkey Protein that Confers Immunity to HIV - HPCwire

PSC's Bridges Helps Scientists Understand Monkey Protein that Confers Immunity to HIV - HPCwire

HPCwire

PSC's Bridges Helps Scientists Understand Monkey Protein that Confers Immunity to HIV
HPCwire
Angela Gronenborn of Pitt and Tatyana Polenova of Delaware used a lab technique called nuclear magnetic resonance (NMR) to study which parts of the virus's capsid protein, called CA, are affected when TRIM5Î± is present. NMR can tell what parts of the ...

Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Mutations in the Basic Region of the Mason-Pfizer Monkey Virus Nucleocapsid Protein Affect Reverse Transcription ... - Journal of Virology Mutations in the Basic Region of the Mason-Pfizer Monkey Virus Nucleocapsid Protein Affect Reverse Transcription ... - Journal of Virology <img alt="" height="1" width="1"> Mutations in the Basic Region of the Mason-Pfizer Monkey Virus Nucleocapsid Protein Affect Reverse Transcription ... Journal of Virology Importantly, in addition to gRNA incorporation, this basic region (KNKEK) at the N terminus of the nucleocapsid protein is crucial for the onset of reverse transcription. Mutations that change the positive charge of the region to a negative one ... and more » Read here	nmrlearner	Online News	0	04-28-2018 03:16 PM
[NMR paper] NMR resonance assignments of the lantibiotic immunity protein NisI from Lactococcus lactis. NMR resonance assignments of the lantibiotic immunity protein NisI from Lactococcus lactis. NMR resonance assignments of the lantibiotic immunity protein NisI from Lactococcus lactis. Biomol NMR Assign. 2015 Jan 23; Authors: Hacker C, Christ NA, Duchardt-Ferner E, Korn S, Berninger L, Kötter P, Entian KD, Wöhnert J Abstract The lantibiotic nisin is a small antimicrobial peptide which acts against a wide range of Gram-positive bacteria. Nisin-producing Lactococcus lactis strains express four genes for self-protection against...	nmrlearner	Journal club	0	01-24-2015 08:47 PM
[NMR paper] Solid-state NMR resonance assignments of the filament-forming CARD domain of the innate immunity signaling protein MAVS. Solid-state NMR resonance assignments of the filament-forming CARD domain of the innate immunity signaling protein MAVS. Solid-state NMR resonance assignments of the filament-forming CARD domain of the innate immunity signaling protein MAVS. Biomol NMR Assign. 2014 Oct 10; Authors: He L, Lührs T, Ritter C Abstract The mitochondrial antiviral signalling protein (MAVS) is a central signal transduction hub in the innate immune response against viral infections. Viral RNA present in the cytoplasm is detected by retinoic acid...	nmrlearner	Journal club	0	10-11-2014 04:02 PM
Expression and purification of myristoylated matrix protein of Mason-Pfizer monkey virus for NMR and MS measurements. Expression and purification of myristoylated matrix protein of Mason-Pfizer monkey virus for NMR and MS measurements. Expression and purification of myristoylated matrix protein of Mason-Pfizer monkey virus for NMR and MS measurements. Protein Expr Purif. 2011 May 24; Authors: Prchal J, Junkova P, Strmiskova M, Lipov J, Hynek R, Ruml T, Hrabal R Matrix proteins play multiple roles both in early and late stages of the viral replication cycle. Their N-terminal myristoylation is important for interaction with the host cell membrane during virus...	nmrlearner	Journal club	0	06-07-2011 11:05 AM
[KPWU blog] Find salt bridges quickly using VMD Find salt bridges quickly using VMD My colleagues asked me to know if they can use PyMol to quickly find information of salt bridges in their working proteins. It seems there is no simple pymol script to do such purpose (at least I can’t find it). I tried writing a shell scripts to extract coordinates from all negative (Glu, Asp) and http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=314&subd=kpwu&ref=&feed=1 Go to KPWU blog to read complete post.	nmrlearner	News from NMR blogs	0	04-09-2011 12:17 AM
[NMR paper] NMR solution structure of ImB2, a protein conferring immunity to antimicrobial activi NMR solution structure of ImB2, a protein conferring immunity to antimicrobial activity of the type IIa bacteriocin, carnobacteriocin B2. Related Articles NMR solution structure of ImB2, a protein conferring immunity to antimicrobial activity of the type IIa bacteriocin, carnobacteriocin B2. Biochemistry. 2004 Sep 21;43(37):11740-9 Authors: Sprules T, Kawulka KE, Vederas JC Bacteriocins produced by lactic acid bacteria are potent antimicrobial compounds which are active against closely related bacteria. Producer strains are protected against...	nmrlearner	Journal club	0	11-24-2010 10:01 PM
[NMR paper] NMR trial models: experiences with the colicin immunity protein Im7 and the p85alpha NMR trial models: experiences with the colicin immunity protein Im7 and the p85alpha C-terminal SH2-peptide complex. Related Articles NMR trial models: experiences with the colicin immunity protein Im7 and the p85alpha C-terminal SH2-peptide complex. Acta Crystallogr D Biol Crystallogr. 2001 Oct;57(Pt 10):1397-404 Authors: Pauptit RA, Dennis CA, Derbyshire DJ, Breeze AL, Weston SA, Rowsell S, Murshudov GN Two cases of successful molecular replacement using NMR trial models are presented. One is the crystal structure of the Escherichia coli...	nmrlearner	Journal club	0	11-19-2010 08:44 PM
[NMR paper] The secondary structure of the colicin E3 immunity protein as studied by 1H-1H and 1H The secondary structure of the colicin E3 immunity protein as studied by 1H-1H and 1H-15N two-dimensional NMR spectroscopy. Related Articles The secondary structure of the colicin E3 immunity protein as studied by 1H-1H and 1H-15N two-dimensional NMR spectroscopy. Biochemistry. 1992 Jun 23;31(24):5578-86 Authors: Yajima S, Muto Y, Yokoyama S, Masaki H, Uozumi T By performing 1H-1H and 1H-15N two-dimensional (2D) nuclear magnetic resonance (NMR) experiments, the complete sequence-specific resonance assignment was determined for the colicin E3...	nmrlearner	Journal club	0	08-21-2010 11:41 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off