Protein power at CAPRI 2013 - International Science Grid This Week

		BioNMR > NMR community > Online News
Protein power at CAPRI 2013 - International Science Grid This Week

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-02-2013, 01:10 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,776

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Protein power at CAPRI 2013 - International Science Grid This Week

Protein power at CAPRI 2013 - International Science Grid This Week

Protein power at CAPRI 2013
International Science Grid This Week
But deciphering their detailed structure is difficult, because you need access to large pieces of kit such as X-ray synchrotrons or nuclear magnetic resonance (NMR) machines â?? plus these protein complexes can be fiendishly tricky to crystalize.

Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Two IPOs on Tap This Week - Investorplace.com <img alt="" height="1" width="1" /> Two IPOs on Tap This Week Investorplace.com LipoScience (NASDAQ:LPDX): The company creates diagnostics based on nuclear magnetic resonance. The main product, LipoProfile, tests the levels of low density lipoprotein, or LDL, particles in a blood sample, which help to manage the risks of heart ... and more » Two IPOs on Tap This Week - Investorplace.com More...	nmrlearner	Online News	0	01-25-2013 10:19 AM
[KPWU blog] [PyMOL] grid mode grid mode It is often that we compare different proteins and want to show all aligned proteins in one time. One popular way shown in scientific papers is to superimpose all structures, however it shows an overlapped “tangle”. *Sometimes such way doesn’t provide a good view for reader. I am going to show you the “grid_mode” provided http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=771&subd=kpwu&ref=&feed=1 Go to KPWU blog to read complete post.	nmrlearner	News from NMR blogs	0	08-27-2012 01:58 AM
Protein power - Chemistry World Protein power - Chemistry World http://www.bionmr.com//nt0.ggpht.com/news/tbn/iMgxVA4gFjehCM/6.jpg Chemistry World <img alt="" height="1" width="1" /> Protein power Chemistry World In addition, his laboratory employs cutting edge methods in protein engineering (computational protein design and directed evolution), structural biology (NMR spectroscopy and x-ray crystallograghy) and cell biology (imaging). What led you to a career ...	nmrlearner	Online News	0	07-06-2012 05:21 PM
[CNS Yahoo group] There's BARELY A WEEK left to apply for RapiData 2012, a course on D There's BARELY A WEEK left to apply for RapiData 2012, a course on D Half of the seats are still available for RapiData 2012, the fourteenth offering of our popular course: Rapid Data Collection and Structure Solving at the More...	nmrlearner	News from other NMR forums	0	02-06-2012 03:54 PM
There's BARELY A WEEK left to apply for RapiData 2012, a course on D There's BARELY A WEEK left to apply for RapiData 2012, a course on D Half of the seats are still available for RapiData 2012, the fourteenth offering of our popular course: Rapid Data Collection and Structure Solving at the More...	nmrlearner	Conferences	0	01-20-2012 11:00 PM
11th International Conference on the applicatiion of Magnetic Resonance in Food Science 2012 11th International Conference on the applicatiion of Magnetic Resonance in Food Science 2012 http://www.rsc.org/images/FEATURE-NMR-SAIL-275_tcm18-52656.jpg rsc.org 29/06/2011 4:46:42 AM GMT More...	nmrlearner	Conferences	0	07-01-2011 05:14 AM
The NMR restraints grid at BMRB for 5,266 protein and nucleic acid PDB entries The NMR restraints grid at BMRB for 5,266 protein and nucleic acid PDB entries Abstract Several pilot experiments have indicated that improvements in older NMR structures can be expected by applying modern software and new protocols (Nabuurs et al. in Proteins 55:483â??186, 2004; Nederveen et al. in Proteins 59:662â??672, 2005; Saccenti and Rosato in J Biomol NMR 40:251â??261, 2008). A recent large scale X-ray study also has shown that modern software can significantly improve the quality of X-ray structures that were deposited more than a few years ago (Joosten et al. in J. Appl...	nmrlearner	Journal club	0	01-09-2011 12:46 PM
[NMR900 blog] C&EN News of the Week: Elevating Oxygen C&EN News of the Week: Elevating Oxygen Two recent NMR papers by Gang Wu (Queen's) and coworkers are highlighted by Chemical & Engineering News in their first issue of 2011. http://pubs.acs.org/cen/news/89/i01/8901notw4.html Both papers deal with 17O NMR in large protein complexes, in solution and in solid state. New research approaches proposed by Gang Wu and his team have a potential to significantly advance the field of protein NMR spectroscopy. Jianfeng Zhu and Gang Wu, "Quadrupole Central Transition 17O NMR Spectroscopy of Biological Macromolecules in Aqueous Solution,"...	nmrlearner	News from NMR blogs	0	01-03-2011 10:48 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off