Protein folding on the ribosome studied using NMR spectroscopy - ScienceDirect.com

		BioNMR > NMR community > Online News
Protein folding on the ribosome studied using NMR spectroscopy - ScienceDirect.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

02-19-2024, 09:38 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Protein folding on the ribosome studied using NMR spectroscopy - ScienceDirect.com

Protein folding on the ribosome studied using NMR spectroscopy - ScienceDirect.com

Protein folding on the ribosome studied using NMR spectroscopy ScienceDirect.com Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Intrinsically disordered proteins studied by NMR spectroscopy - ScienceDirect Intrinsically disordered proteins studied by NMR spectroscopy - ScienceDirect Intrinsically disordered proteins studied by NMR spectroscopy ScienceDirect Read here	nmrlearner	Online News	0	12-28-2023 10:50 PM
Structures and Dynamics of Protein Folding on the Ribosome by NMR Spectroscopy Structures and Dynamics of Protein Folding on the Ribosome by NMR Spectroscopy Publication date: 2 February 2018 Source:Biophysical Journal, Volume 114, Issue 3, Supplement 1</br> Author(s): Anais M. Cassaignau, Christopher Waudby, Tomasz Wlodarski, Lisa Cabrita, John Christodoulou</br> </br></br> </br></br> More...	nmrlearner	Journal club	0	02-07-2018 03:41 PM
[NMR paper] A strategy for co-translational folding studies of ribosome-bound nascent chain complexes using NMR spectroscopy. A strategy for co-translational folding studies of ribosome-bound nascent chain complexes using NMR spectroscopy. Related Articles A strategy for co-translational folding studies of ribosome-bound nascent chain complexes using NMR spectroscopy. Nat Protoc. 2016 Aug;11(8):1492-1507 Authors: Cassaignau AM, Launay HM, Karyadi ME, Wang X, Waudby CA, Deckert A, Robertson AL, Christodoulou J, Cabrita LD Abstract During biosynthesis on the ribosome, an elongating nascent polypeptide chain can begin to fold, in a process that is central...	nmrlearner	Journal club	0	07-29-2016 03:01 PM
Millisecond protein folding studied by NMR spectroscopy. Millisecond protein folding studied by NMR spectroscopy. Millisecond protein folding studied by NMR spectroscopy. More...	nmrlearner	General	0	02-09-2015 07:49 PM
[NMR paper] Protein folding on the ribosome studied using NMR spectroscopy. Protein folding on the ribosome studied using NMR spectroscopy. Protein folding on the ribosome studied using NMR spectroscopy. Prog Nucl Magn Reson Spectrosc. 2013 Oct;74C:57-75 Authors: Waudby CA, Launay H, Cabrita LD, Christodoulou J Abstract NMR spectroscopy is a powerful tool for the investigation of protein folding and misfolding, providing a characterization of molecular structure, dynamics and exchange processes, across a very wide range of timescales and with near atomic resolution. In recent years NMR methods have also been...	nmrlearner	Journal club	0	10-03-2013 03:31 PM
Protein folding on the ribosome studied using NMR spectroscopy Protein folding on the ribosome studied using NMR spectroscopy Publication date: Available online 27 July 2013 Source:Progress in Nuclear Magnetic Resonance Spectroscopy</br> Author(s): Christopher A. Waudby , Hélène Launay , Lisa D. Cabrita , John Christodoulou</br> NMR spectroscopy is a powerful tool for the investigation of protein folding and misfolding, providing a characterization of molecular structure, dynamics and exchange processes, across a very wide range of timescales and with near atomic resolution. In recent years NMR methods have also been...	nmrlearner	Journal club	0	07-28-2013 07:11 AM
Co-Translational Protein Folding on the Ribosome: using NMR Spectroscopy to Provide Structure and Dynamics of Ribosome-Nascent Chains Co-Translational Protein Folding on the Ribosome: using NMR Spectroscopy to Provide Structure and Dynamics of Ribosome-Nascent Chains 29 January 2013 Publication year: 2013 Source:Biophysical Journal, Volume 104, Issue 2, Supplement 1</br> </br> </br> </br></br>	nmrlearner	Journal club	0	02-03-2013 10:13 AM
[NMR paper] Millisecond protein folding studied by NMR spectroscopy. Millisecond protein folding studied by NMR spectroscopy. Related Articles Millisecond protein folding studied by NMR spectroscopy. Protein Pept Lett. 2005 Feb;12(2):139-46 Authors: Zeeb M, Balbach J Proteins are involved in virtually every biological process and in order to function, it is necessary for these polypeptide chains to fold into the unique, native conformation. This folding process can take place rapidly. NMR line shape analyses and transverse relaxation measurements allow protein folding studies on a microsecond-to-millisecond...	nmrlearner	Journal club	0	11-24-2010 11:14 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off