Protein engineering: The power of four - Nature.com

		BioNMR > NMR community > Online News
Protein engineering: The power of four - Nature.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

03-24-2015, 09:58 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,734

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Protein engineering: The power of four - Nature.com

Protein engineering: The power of four - Nature.com

Protein engineering: The power of four
Nature.com
The final structure of the dimer of dimers, which they called 'rocker', was characterized by X-ray crystallography, and a variety of NMR techniques, which, in combination with molecular dynamic simulations, indicated that the peptide assembly did ...

Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Protein power at CAPRI 2013 - International Science Grid This Week Protein power at CAPRI 2013 - International Science Grid This Week <img alt="" height="1" width="1" /> Protein power at CAPRI 2013 International Science Grid This Week But deciphering their detailed structure is difficult, because you need access to large pieces of kit such as X-ray synchrotrons or nuclear magnetic resonance (NMR) machines â?? plus these protein complexes can be fiendishly tricky to crystalize. Read here	nmrlearner	Online News	0	05-02-2013 01:10 AM
Targeting Protein-Protein Interactions - Genetic Engineering News Targeting Protein-Protein Interactions - Genetic Engineering News <img alt="" height="1" width="1" /> Targeting Protein-Protein Interactions Genetic Engineering News Researchers are scheduled to present the cutting edge of their tools and technologies targeting protein-protein interactions (PPIs) at Select Biosciences' upcoming â??Discovery Chemistry Congressâ?? meeting. New tools and approaches aimed at visualization ... Read here	nmrlearner	Online News	0	02-15-2013 05:21 PM
Protein power - Chemistry World Protein power - Chemistry World http://www.bionmr.com//nt0.ggpht.com/news/tbn/iMgxVA4gFjehCM/6.jpg Chemistry World <img alt="" height="1" width="1" /> Protein power Chemistry World In addition, his laboratory employs cutting edge methods in protein engineering (computational protein design and directed evolution), structural biology (NMR spectroscopy and x-ray crystallograghy) and cell biology (imaging). What led you to a career ...	nmrlearner	Online News	0	07-06-2012 05:21 PM
[NMR paper] Protein engineering and NMR studies of calmodulin. Protein engineering and NMR studies of calmodulin. Related Articles Protein engineering and NMR studies of calmodulin. Mol Cell Biochem. 1995 Aug-Sep;149-150:3-15 Authors: Vogel HJ, Zhang M The calcium regulatory protein calmodulin (CaM) plays a role as an on-off switch in the activation of many enzymes and proteins. CaM has a dumbbell shaped structure with two folded domains, which are connected by a flexible linker in solution. The calmodulin-binding domains of the target proteins are contained in 20 residue long amino acid sequences, that...	nmrlearner	Journal club	0	08-22-2010 03:50 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off