Protein dance on nanoparticle surface revealed - The Biological SCENE

		BioNMR > NMR community > Online News
Protein dance on nanoparticle surface revealed - The Biological SCENE

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-16-2016, 05:53 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,778

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Protein dance on nanoparticle surface revealed - The Biological SCENE

Protein dance on nanoparticle surface revealed
The Biological SCENE
The growing use of nanomaterials in biomedical applications makes understanding nanoparticle-protein interactions an important goal. Nuclear magnetic resonance spectroscopy is a promising way to probe such interactions. But because of the huge size ...

Protein dance on nanoparticle surface revealed - The Biological SCENE
More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Designed Protein Shelters Radical - The Biological SCENE http://www.bionmr.com//t1.gstatic.com/images?q=tbn:ANd9GcQpXVDOfM06zWc8IdT0kLJio-ctj8yhBCnuU90rnfh_MJKlAc6UcwGC2rrH_G-S95MXw5OaFhjL The Biological SCENE <img alt="" height="1" width="1"> Designed Protein Shelters Radical The Biological SCENE The researchers also used optical spectroscopy, electron paramagnetic resonance spectroscopy, nuclear magnetic resonance spectroscopy, redox titrations, and computational modeling to figure out exactly why it worked. The radical is actually the monkey ... Designed Protein Shelters Radical - The Biological SCENE	nmrlearner	Online News	0	02-18-2016 08:10 PM
Eye Exam For Chaperone - The Biological SCENE <img alt="" height="1" width="1"> Eye Exam For Chaperone The Biological SCENE But how this chaperone protein works on a molecular level has been a mystery. Because human Î±-crystallin has a variable number of subunits, it has been difficult to use techniques such as nuclear magnetic resonance (NMR) spectroscopy to study its shape ... Eye Exam For Chaperone - The Biological SCENE More...	nmrlearner	Online News	0	01-05-2015 04:06 PM
Phosphorylation Pushes Floppy Protein To Fold - The Biological SCENE Phosphorylation Pushes Floppy Protein To Fold - The Biological SCENE http://www.bionmr.com//t1.gstatic.com/images?q=tbn:ANd9GcSDLGN_tQADxvawLh1JtaYgScQu-c5J43vlQiKSMBJMQQTloDwqvAl0r9D8lVGGoQ9r75UVqSg The Biological SCENE <img alt="" height="1" width="1"> Phosphorylation Pushes Floppy Protein To Fold The Biological SCENE Intrinsically disordered proteins, which lack a well-defined three-dimensional structure, typically fold up only when they bind their targets. But appending phosphate groups, a common protein modification, can be enough to make one of these floppy ...	nmrlearner	Online News	0	01-05-2015 04:06 PM
Phosphorylation Pushes Floppy Protein To Fold - The Biological SCENE Phosphorylation Pushes Floppy Protein To Fold - The Biological SCENE http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcSGAROi5B4cGBalIfrRZF44V2_shbZdA5C6lY2lehBe4AkncdXvu2TKjsbAdC3cnMF4b3tk-8E The Biological SCENE <img alt="" height="1" width="1"> Phosphorylation Pushes Floppy Protein To Fold The Biological SCENE Intrinsically disordered proteins, which lack a well-defined three-dimensional structure, typically fold up only when they bind their targets. But appending phosphate groups, a common protein modification, can be enough to make one of these floppy ...	nmrlearner	Online News	0	12-24-2014 03:35 AM
Study Suggests Mechanism For How Eye Protein Protects Against Cataracts - The Biological SCENE Study Suggests Mechanism For How Eye Protein Protects Against Cataracts - The Biological SCENE <img alt="" height="1" width="1"> Study Suggests Mechanism For How Eye Protein Protects Against Cataracts The Biological SCENE Because human Î±-crystallin is a large protein with a variable number of subunits, it has been difficult to use techniques such as nuclear magnetic resonance spectroscopy (NMR) to study the shape changes and binding interactions it undergoes as it ... Read here	nmrlearner	Online News	0	12-23-2014 12:58 PM
Watching A Helper Protein Do Its Job - The Biological SCENE Watching A Helper Protein Do Its Job - The Biological SCENE <img alt="" height="1" width="1" /> Watching A Helper Protein Do Its Job The Biological SCENE â??This is an innovative approach that transcends the traditional techniques such as protein NMR and crystallography for detecting the highly mobile Ppant arm in action,â?? comments polyketide biosynthesis expert Shiou-Chuan (Sheryl) Tsai of the University ... Read here	nmrlearner	Online News	0	08-22-2014 07:27 PM
NMR-EPR Combo Yields RNA-Protein Structure - The Biological SCENE NMR-EPR Combo Yields RNA-Protein Structure - The Biological SCENE http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcSUfroVOJ3Vguao95n8feL0b6T4rgW7oE8ZIpQqclY01_OIHnuCQqryfsN7sWVPrwvy3h28eog The Biological SCENE <img alt="" height="1" width="1" /> NMR-EPR Combo Yields RNA-Protein Structure The Biological SCENE The ability of the new combined NMR-EPR approach to resolve solution structures of RNA and RNA-protein complexes makes it a â??very powerfulâ?? tool, says Hashim Al-Hashimi, a biochemistry professor at Duke University School of Medicine who was not ...	nmrlearner	Online News	0	05-19-2014 09:01 AM
Proteins Made To Order - The Biological SCENE Proteins Made To Order - The Biological SCENE http://www.bionmr.com//nt3.ggpht.com/news/tbn/F-bqGsEbXXBhFM/6.jpg The Biological SCENE <img alt="" height="1" width="1" /> Proteins Made To Order The Biological SCENE Each red dot in the energy landscape is the lowest energy structure of the amino acid sequence of a designed protein as predicted by a Rosetta@home volunteer. The actual structure obtained with NMR (blue) closely matches the intended design structure ...	nmrlearner	Online News	0	11-12-2012 05:43 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off