Protein analysis uncovers new medulloblastoma subtypes - MIT News

		BioNMR > NMR community > Online News
Protein analysis uncovers new medulloblastoma subtypes - MIT News

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

03-24-2019, 10:41 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Protein analysis uncovers new medulloblastoma subtypes - MIT News

Protein analysis uncovers new medulloblastoma subtypes - MIT News

Protein analysis uncovers new medulloblastoma subtypes MIT NewsMIT and Broad Institute research team shows the power of proteomics to discover new drug targets for medulloblastoma subtypes.

Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Protein Analysis Using Small-Angle X-Ray Scattering (SAXS) - News-Medical.net Protein Analysis Using Small-Angle X-Ray Scattering (SAXS) - News-Medical.net Protein Analysis Using Small-Angle X-Ray Scattering (SAXS) News-Medical.netSmall-angle X-ray scattering (SAXS) is an analytical technique used to identify differences in density within a sample with nanoscale resolution. Read here	nmrlearner	Online News	0	03-24-2019 10:41 PM
[ASAP] Characterization of Caenorhabditis elegans Nucleosome Assembly Protein 1 Uncovers the Role of Acidic Tails in Histone Binding Characterization of Caenorhabditis elegans Nucleosome Assembly Protein 1 Uncovers the Role of Acidic Tails in Histone Binding https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.8b01033/20181211/images/medium/bi-2018-01033j_0005.gif Biochemistry DOI: 10.1021/acs.biochem.8b01033 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/nlhL_HK5nb4 More...	nmrlearner	Journal club	0	01-07-2019 05:49 AM
Protein Crystallization Market :Evolving Technology, Trends and Industry Analysis 2025 - CMFE News (press release) (blog) Protein Crystallization Market :Evolving Technology, Trends and Industry Analysis 2025 - CMFE News (press release) (blog) <img alt="" height="1" width="1"> Protein Crystallization Market :Evolving Technology, Trends and Industry Analysis 2025 CMFE News (press release) (blog) New and innovative product launches by key manufacturers are also projected to drive the demand for protein crystallization in the near future. However, factors such as lack of qualified and experienced researchers and crystallizing a protein without ... Read here	nmrlearner	Online News	0	03-23-2018 11:18 AM
Scripps Uncovers Structure of Key Protein Receptor for Medications - Times of San Diego Scripps Uncovers Structure of Key Protein Receptor for Medications - Times of San Diego http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcSnjfYhXgxKlbW7d9iOnPIQxqBOzq9qfp2w22HrZjyDhSIl-AeieJIGkQr54cQV_K4BalVT7AYv Times of San Diego <img alt="" height="1" width="1"> Scripps Uncovers Structure of Key Protein Receptor for Medications Times of San Diego Matthew Eddy and Kurt WÃ¼thrich Study leaders Matthew Eddy (left) and Nobel laureate Kurt WÃ¼thrich with their imaging equipment. Photo by Madeline McCurry-Schmidt for Scripps Research Institute. A study led by the Scripps Research...	nmrlearner	Online News	0	01-11-2018 04:07 PM
Parkinson's Disease protein plays vital â??marshallingâ?? role in healthy brains - Daily News & Analysis http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcQYEpOi--oLWEITCOqd3AWvCwpVqMLdepq7hCd4LgzYQCgtrFiEj68Y8dFrtK0O5wEE-8IeoWJD Daily News & Analysis <img alt="" height="1" width="1"> Parkinson's Disease protein plays vital â??marshallingâ?? role in healthy brains Daily News & Analysis The study involved lab-based experiments in which synthetic vesicles, modelling the synaptic vesicles found the brain, were exposed to alpha-synuclein. Using nuclear magnetic resonance spectroscopy, the researchers examined how the protein organised ... and more » Parkinson's Disease...	nmrlearner	Online News	0	09-22-2016 06:26 AM
[NMR paper] Dual screening of BPTF and Brd4 using protein-observed fluorine NMR uncovers new bromodomain probe molecules. Dual screening of BPTF and Brd4 using protein-observed fluorine NMR uncovers new bromodomain probe molecules. Dual screening of BPTF and Brd4 using protein-observed fluorine NMR uncovers new bromodomain probe molecules. ACS Chem Biol. 2015 Jul 9; Authors: Urick AK, Hawk LM, Cassel MK, Mishra NK, Liu S, Adhikari N, Zhang W, Dos Santos CO, Hall JL, Pomerantz WC Abstract Bromodomain-containing protein dysregulation is linked to cancer, diabetes, and inflammation. Selec-tive inhibition of bromodomain function is a newly...	nmrlearner	Journal club	0	07-12-2015 07:12 AM
St. Jude analysis reveals how protein p53 triggers cancer cells to commit suicide - News-Medical.net St. Jude analysis reveals how protein p53 triggers cancer cells to commit suicide - News-Medical.net <img alt="" height="1" width="1" /> St. Jude analysis reveals how protein p53 triggers cancer cells to commit suicide News-Medical.net In their studies, the researchers used a structural analysis technique called NMR spectroscopy to map the 3-D structure of p53 binding to BCL-xL. Their experiments also revealed in detail how one region of the p53 protein, called the DNA-binding domain ... Detailed Studies Reveal how key Cancer-Fighting Protein is Held in CheckPR Web (press release) ...	nmrlearner	Online News	0	05-16-2014 07:46 AM
Affymetrix Launches NG Classâ?¢ Detergents For Superior Protein Analysis - Medical News Today (press release) <img alt="" height="1" width="1" /> Affymetrix Launches NG Classâ?¢ Detergents For Superior Protein Analysis Medical News Today (press release) "Our new NG Class Detergents give biologists enhanced tools to solve the structure of membrane proteins using advanced techniques, such as nuclear magnetic resonance and X-ray diffraction." Membrane proteins are important because they mediate the ... and more » Affymetrix Launches NG Classâ?¢ Detergents For Superior Protein Analysis - Medical News Today (press release) More...	nmrlearner	Online News	0	02-17-2011 09:41 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off