Picometer Resolution Structure of the Coordination Sphere in the Metal-Binding Site in a Metalloprotein by NMR - ACS Publications

		BioNMR > NMR community > Online News
Picometer Resolution Structure of the Coordination Sphere in the Metal-Binding Site in a Metalloprotein by NMR - ACS Publications

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

10-13-2024, 12:40 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Picometer Resolution Structure of the Coordination Sphere in the Metal-Binding Site in a Metalloprotein by NMR - ACS Publications

Picometer Resolution Structure of the Coordination Sphere in the Metal-Binding Site in a Metalloprotein by NMR - ACS Publications

Picometer Resolution Structure of the Coordination Sphere in the Metal-Binding Site in a Metalloprotein by NMR ACS Publications Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR paper] A High-Resolution View of the Coordination Environment in a Paramagnetic Metalloprotein from its Magnetic Properties A High-Resolution View of the Coordination Environment in a Paramagnetic Metalloprotein from its Magnetic Properties Angewandte Chemie International Edition, EarlyView. More...	nmrlearner	Journal club	0	05-27-2021 03:21 PM
[ASAP] Picometer Resolution Structure of the Coordination Sphere in the Metal-Binding Site in a Metalloprotein by NMR Picometer Resolution Structure of the Coordination Sphere in the Metal-Binding Site in a Metalloprotein by NMR Andrea Bertarello, Ladislav Benda, Kevin J. Sanders, Andrew J. Pell, Michael J. Knight, Vladimir Pelmenschikov, Leonardo Gonnelli, Isabella C. Felli, Martin Kaupp, Lyndon Emsley, Roberta Pierattelli, and Guido Pintacuda https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/jacs.0c07339/20200919/images/medium/ja0c07339_0005.gif Journal of the American Chemical Society DOI: 10.1021/jacs.0c07339...	nmrlearner	Journal club	0	09-21-2020 05:44 PM
[NMR paper] Long-range paramagnetic NMR data can provide a closer look on metal coordination in metalloproteins. Long-range paramagnetic NMR data can provide a closer look on metal coordination in metalloproteins. Related Articles Long-range paramagnetic NMR data can provide a closer look on metal coordination in metalloproteins. J Biol Inorg Chem. 2017 Dec 07;: Authors: Cerofolini L, Staderini T, Giuntini S, Ravera E, Fragai M, Parigi G, Pierattelli R, Luchinat C Abstract Paramagnetic NMR data can be profitably incorporated in structural refinement protocols of metalloproteins or metal-substituted proteins, mostly as distance or angle...	nmrlearner	Journal club	0	12-10-2017 01:21 AM
Heavy metal binding domain in a cysteine-rich protein may be sea snail adaptation to metal stress - Phys.Org Heavy metal binding domain in a cysteine-rich protein may be sea snail adaptation to metal stress - Phys.Org <img alt="" height="1" width="1"> Heavy metal binding domain in a cysteine-rich protein may be sea snail adaptation to metal stress Phys.Org Structural Adaptation of a Protein to Increased Metal Stress: NMR Structure of a Marine Snail Metallothionein with an Additional Domain. Credit: Wiley. A special type of small sulfur-rich protein, metallothioneins, have an extraordinary capability for ... Read here	nmrlearner	Online News	0	03-24-2017 10:00 AM
[NMR paper] Structure and Coordination Determination of Peptide-metal Complexes Using 1D and 2D 1H NMR. Structure and Coordination Determination of Peptide-metal Complexes Using 1D and 2D 1H NMR. Related Articles Structure and Coordination Determination of Peptide-metal Complexes Using 1D and 2D 1H NMR. J Vis Exp. 2013;(82) Authors: Shoshan MS, Tshuva EY, Shalev DE Abstract Copper (I) binding by metallochaperone transport proteins prevents copper oxidation and release of the toxic ions that may participate in harmful redox reactions. The Cu (I) complex of the peptide model of a Cu (I) binding metallochaperone protein, which includes the...	nmrlearner	Journal club	0	01-01-2014 03:05 PM
[NMR paper] The Involvement of Amino Acid Side Chains in Shielding the Nickel Coordination Site: An NMR Study. The Involvement of Amino Acid Side Chains in Shielding the Nickel Coordination Site: An NMR Study. The Involvement of Amino Acid Side Chains in Shielding the Nickel Coordination Site: An NMR Study. Molecules. 2013;18(10):12396-12414 Authors: Medici S, Peana M, Nurchi VM, Zoroddu MA Abstract Coordination of proteins and peptides to metal ions is known to affect their properties, often by a change in their structural organization. Side chains of the residues directly involved in metal binding or very close to the coordination centre...	nmrlearner	Journal club	0	10-11-2013 10:43 AM
[NMR paper] Validation of the binding site structure of the cellular retinol-binding protein (CRB Validation of the binding site structure of the cellular retinol-binding protein (CRBP) by ligand NMR chemical shift perturbations. Related Articles Validation of the binding site structure of the cellular retinol-binding protein (CRBP) by ligand NMR chemical shift perturbations. J Am Chem Soc. 2005 Apr 20;127(15):5310-1 Authors: Wang B, Merz KM We have calculated proton chemical shift perturbations (CSPs) of retinol in the cellular retinol-binding protein (CRBP) through the use of a recently developed computational approach (Wang et al. J....	nmrlearner	Journal club	0	11-25-2010 08:21 PM
[NMR paper] NMR evidence for perturbation of the copper coordination sphere upon chemical modific NMR evidence for perturbation of the copper coordination sphere upon chemical modification of arginine 141 in bovine Cu,Zn superoxide dismutase. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles NMR evidence for perturbation of the copper coordination sphere upon chemical modification of arginine 141 in bovine Cu,Zn superoxide dismutase. Arch Biochem Biophys. 1991 Apr;286(1):222-5 Authors: Paci M, Desideri A, Sette M, Rotilio G The reaction of the Cu,Co derivative of...	nmrlearner	Journal club	0	08-21-2010 11:16 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off