Physics - Predicting the Structures of Proteins - Physics

		BioNMR > NMR community > Online News
Physics - Predicting the Structures of Proteins - Physics

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

11-29-2022, 12:48 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Physics - Predicting the Structures of Proteins - Physics

Physics - Predicting the Structures of Proteins - Physics

Physics - Predicting the Structures of Proteins Physics Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Evolutionary insights into shape-shifting proteins: Physics Today: Vol 74, No 3 - Physics Today Evolutionary insights into shape-shifting proteins: Physics Today: Vol 74, No 3 - Physics Today Evolutionary insights into shape-shifting proteins: Physics Today: Vol 74, No 3 Physics Today Read here	nmrlearner	Online News	0	03-02-2021 01:09 PM
Evolutionary insights into shape-shifting proteins - Physics Today Evolutionary insights into shape-shifting proteins - Physics Today Evolutionary insights into shape-shifting proteins Physics Today Read here	nmrlearner	Online News	0	01-28-2021 02:26 AM
NMR protein structures: No deuteration required - Physics Today NMR protein structures: No deuteration required - Physics Today <img alt="" height="1" width="1"> NMR protein structures: No deuteration required Physics Today Unlike x-ray crystallography, it doesn't require a crystalline sample, and it's well suited to the small and medium-sized membrane proteins currently beyond the reach of cryoelectron microscopy. Even with magic-angle spinning, 1H NMR protein spectra ... Read here	nmrlearner	Online News	0	08-19-2016 04:05 AM
[Stan NMR blog] Physics constants at a glance Physics constants at a glance DATABASE: An overhaul, update to recent values, and many additions. Source: Stan blog library	nmrlearner	News from NMR blogs	0	01-06-2014 08:50 PM
[NMR900 blog] Physics of MRI: A Primer Physics of MRI: A Primer An introductory lecture on physics of MRI by Donald Plewes and Walter Kucharczyk (University of Toronto). D.B. Plewes and W. Kucharczyk, "Physics of MRI: A Primer," Journal of Magnetic Resonance Imaging 35 (2012) 1038–1054. (Review: MR Physics for Clinicians) http://dx.doi.org/10.1002/jmri.23642https://blogger.googleusercontent.com/tracker/8663203727601106205-5490202703291511044?l=nmr900.blogspot.com Read complete story on NMR900 blog	nmrlearner	News from NMR blogs	0	04-13-2012 08:21 PM
physics of the NMR method. http://www.cflhd.gov/resources/agm/images/fig164.jpg cflhd.gov 1/11/2010 8:46:07 AM GMT physics of the NMR method. More...	nmrlearner	NMR pictures	0	11-01-2010 08:53 AM
physics of the NMR method. http://www.cflhd.gov/resources/agm/images/fig164.jpg cflhd.gov 1/11/2010 8:46:07 AM GMT physics of the NMR method. More...	nmrlearner	NMR pictures	0	11-01-2010 08:53 AM
[Stan NMR blog] Physics Books Physics Books BOOKS LIST: A huge collection with links to Amazon. More...	nmrlearner	News from NMR blogs	0	08-21-2010 06:14 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off