Observation of sequential steps in the folding of intestinal fatty acid binding protein using a slow folding mutant and - pnas.org

		BioNMR > NMR community > Online News
Observation of sequential steps in the folding of intestinal fatty acid binding protein using a slow folding mutant and - pnas.org

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

07-24-2024, 08:25 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Observation of sequential steps in the folding of intestinal fatty acid binding protein using a slow folding mutant and - pnas.org

Observation of sequential steps in the folding of intestinal fatty acid binding protein using a slow folding mutant and - pnas.org

Observation of sequential steps in the folding of intestinal fatty acid binding protein using a slow folding mutant and pnas.org Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Observation of sequential steps in the folding of intestinal fatty acid binding protein using a slow folding mutant and 19F ... - pnas.org Observation of sequential steps in the folding of intestinal fatty acid binding protein using a slow folding mutant and 19F ... - pnas.org Observation of sequential steps in the folding of intestinal fatty acid binding protein using a slow folding mutant and 19F ... pnas.org Read here	nmrlearner	Online News	0	02-23-2024 11:21 PM
Analyzing the Folding and Binding Steps of an IntrinsicallyDisordered Protein by Protein Engineering Analyzing the Folding and Binding Steps of an IntrinsicallyDisordered Protein by Protein Engineering http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00350/20170711/images/medium/bi-2017-003503_0007.gif Biochemistry DOI: 10.1021/acs.biochem.7b00350 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/j3CveFOWO9k More...	nmrlearner	Journal club	0	07-12-2017 12:48 AM
The Non-native Helical Intermediate State May Accumulateat Low pH in the Folding and Aggregation Landscape of the IntestinalFatty Acid Binding Protein The Non-native Helical Intermediate State May Accumulateat Low pH in the Folding and Aggregation Landscape of the IntestinalFatty Acid Binding Protein http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.6b00390/20160803/images/medium/bi-2016-003902_0008.gif Biochemistry DOI: 10.1021/acs.biochem.6b00390 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/Rud0gCwvf3A More...	nmrlearner	Journal club	0	08-04-2016 11:21 PM
[NMR paper] NMR studies of 4-19F-phenylalanine-labeled intestinal fatty acid binding protein: evi NMR studies of 4-19F-phenylalanine-labeled intestinal fatty acid binding protein: evidence for conformational heterogeneity in the native state. Related Articles NMR studies of 4-19F-phenylalanine-labeled intestinal fatty acid binding protein: evidence for conformational heterogeneity in the native state. Biochemistry. 2005 Feb 22;44(7):2369-77 Authors: Li H, Frieden C (19)F-Nuclear magnetic resonance (NMR) studies have been carried out after incorporation of 4-(19)F-phenylalanine into the intestinal fatty acid binding protein (IFABP), a...	nmrlearner	Journal club	0	11-24-2010 11:14 PM
[NMR paper] Intestinal fatty acid binding protein: the folding mechanism as determined by NMR stu Intestinal fatty acid binding protein: the folding mechanism as determined by NMR studies. Related Articles Intestinal fatty acid binding protein: the folding mechanism as determined by NMR studies. Biochemistry. 2001 Jan 23;40(3):732-42 Authors: Hodsdon ME, Frieden C The intestinal fatty acid binding protein is composed of two beta-sheets surrounding a large interior cavity. There is a small helical domain associated with the portal for entry of the ligand into the cavity. Denaturation of the protein has been monitored in a residue-specific...	nmrlearner	Journal club	0	11-19-2010 08:32 PM
[NMR paper] Ligand binding alters the backbone mobility of intestinal fatty acid-binding protein Ligand binding alters the backbone mobility of intestinal fatty acid-binding protein as monitored by 15N NMR relaxation and 1H exchange. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-acspubs.jpg Related Articles Ligand binding alters the backbone mobility of intestinal fatty acid-binding protein as monitored by 15N NMR relaxation and 1H exchange. Biochemistry. 1997 Feb 25;36(8):2278-90 Authors: Hodsdon ME, Cistola DP The backbone dynamics of the liganded (holo) and unliganded (apo) forms of Escherichia...	nmrlearner	Journal club	0	08-22-2010 03:31 PM
[NMR paper] Ligand binding alters the backbone mobility of intestinal fatty acid-binding protein Ligand binding alters the backbone mobility of intestinal fatty acid-binding protein as monitored by 15N NMR relaxation and 1H exchange. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-acspubs.jpg Related Articles Ligand binding alters the backbone mobility of intestinal fatty acid-binding protein as monitored by 15N NMR relaxation and 1H exchange. Biochemistry. 1997 Feb 25;36(8):2278-90 Authors: Hodsdon ME, Cistola DP The backbone dynamics of the liganded (holo) and unliganded (apo) forms of Escherichia...	nmrlearner	Journal club	0	08-22-2010 03:03 PM
[NMR paper] The NMR solution structure of intestinal fatty acid-binding protein complexed with pa The NMR solution structure of intestinal fatty acid-binding protein complexed with palmitate: application of a novel distance geometry algorithm. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles The NMR solution structure of intestinal fatty acid-binding protein complexed with palmitate: application of a novel distance geometry algorithm. J Mol Biol. 1996 Dec 6;264(3):585-602 Authors: Hodsdon ME, Ponder JW, Cistola DP The three-dimensional solution structure of rat...	nmrlearner	Journal club	0	08-22-2010 02:20 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off