Nuclear Magnetic Resonance Shows Structure of Proteins at Atomic Resolution - Medgadget (blog)

		BioNMR > NMR community > Online News
Nuclear Magnetic Resonance Shows Structure of Proteins at Atomic Resolution - Medgadget (blog)

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

07-08-2017, 02:54 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,778

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Nuclear Magnetic Resonance Shows Structure of Proteins at Atomic Resolution - Medgadget (blog)

Nuclear Magnetic Resonance Shows Structure of Proteins at Atomic Resolution - Medgadget (blog)

Medgadget (blog)

Nuclear Magnetic Resonance Shows Structure of Proteins at Atomic Resolution
Medgadget (blog)
The sensor, which acts as a minute NMR antenna, is a diamond with a nitrogen atom embedded into its carbon lattice close to the surface of the crystal. The physicists call the site of the nitrogen atom the NV centre: N for nitrogen and V for vacancy ...

Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR paper] Exploring Free-Energy Landscapes of Intrinsically Disordered Proteins at Atomic Resolution Using NMR Spectroscopy. Exploring Free-Energy Landscapes of Intrinsically Disordered Proteins at Atomic Resolution Using NMR Spectroscopy. Exploring Free-Energy Landscapes of Intrinsically Disordered Proteins at Atomic Resolution Using NMR Spectroscopy. Chem Rev. 2014 Apr 11; Authors: Jensen MR, Zweckstetter M, Huang JR, Blackledge M PMID: 24725176	nmrlearner	Journal club	0	04-15-2014 10:38 AM
[NMR images] ... nuclear magnetic resonance facility at oregon state university shows http://oregonstate.edu/dept/ncs/lifeatosu/wp-content/uploads/2010/06/kohnert.jpg 17/03/2014 6:52:30 AM GMT ... nuclear magnetic resonance facility at oregon state university shows More...	nmrlearner	NMR pictures	0	03-17-2014 06:52 AM
[NMR images] Nuclear magnetic resonance shows how calmodulin (yellow) brings ... http://www.news.ucdavis.edu/photos_images/news_images/02_2012/estrogen.gif 16/03/2014 2:04:22 AM GMT Nuclear magnetic resonance shows how calmodulin (yellow) brings ... More...	nmrlearner	NMR pictures	0	03-16-2014 04:09 PM
[NMR paper] In-Cell NMR Spectroscopy-In vivo Monitoring of the Structure, Dynamics, Folding, and Interactions of Proteins at Atomic Resolution. In-Cell NMR Spectroscopy-In vivo Monitoring of the Structure, Dynamics, Folding, and Interactions of Proteins at Atomic Resolution. In-Cell NMR Spectroscopy-In vivo Monitoring of the Structure, Dynamics, Folding, and Interactions of Proteins at Atomic Resolution. J Anal Bioanal Tech. 2013 Jan 2;4(1):e112 Authors: Kumar TK, Thurman R, Jayanthi S PMID: 23956945	nmrlearner	Journal club	0	08-21-2013 08:49 PM
[NMR paper] Describing intrinsically disordered proteins at atomic resolution by NMR. Describing intrinsically disordered proteins at atomic resolution by NMR. Related Articles Describing intrinsically disordered proteins at atomic resolution by NMR. Curr Opin Struct Biol. 2013 Mar 29; Authors: Jensen MR, Ruigrok RW, Blackledge M Abstract There is growing interest in the development of physical methods to study the conformational behaviour and biological activity of intrinsically disordered proteins (IDPs). In this review recent advances in the elucidation of quantitative descriptions of disordered proteins from...	nmrlearner	Journal club	0	04-03-2013 08:22 PM
Describing intrinsically disordered proteins at atomic resolution by NMR Describing intrinsically disordered proteins at atomic resolution by NMR Available online 29 March 2013 Publication year: 2013 Source:Current Opinion in Structural Biology</br> </br> There is growing interest in the development of physical methods to study the conformational behaviour and biological activity of intrinsically disordered proteins (IDPs). In this review recent advances in the elucidation of quantitative descriptions of disordered proteins from nuclear magnetic resonance spectroscopy are presented. Ensemble approaches are particularly well adapted to map the...	nmrlearner	Journal club	0	03-29-2013 07:52 PM
[NMR tweet] Biophysical examination of proteins by nuclear magnetic resonance:Atomic structures of macromolecules in solution Biophysical examination of proteins by nuclear magnetic resonance:Atomic structures of macromolecules in solution Published by Theanphropy (James-N LEE-ANGEL) on 2011-12-24T00:17:57Z Source: Twitter	nmrlearner	Twitter NMR	0	12-24-2011 12:27 AM
Atomic-Resolution Three-Dimensional Structure of HET-s(218-289) Amyloid Fibrils by So Atomic-Resolution Three-Dimensional Structure of HET-s(218-289) Amyloid Fibrils by Solid-State NMR Spectroscopy He?le?ne Van Melckebeke, Christian Wasmer, Adam Lange, Eiso AB, Antoine Loquet, Anja Bo?ckmann and Beat H. Meier http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja104213j/aop/images/medium/ja-2010-04213j_0001.gif Journal of the American Chemical Society DOI: 10.1021/ja104213j http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/qGRhA6CtOVc	nmrlearner	Journal club	0	09-10-2010 12:48 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off