Nuclear magnetic resonance analysis of protein–DNA interactions | Journal of The Royal Society Interface - Royal Society

		BioNMR > NMR community > Online News
Nuclear magnetic resonance analysis of protein–DNA interactions \| Journal of The Royal Society Interface - Royal Society

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

04-07-2023, 06:10 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Nuclear magnetic resonance analysis of protein–DNA interactions | Journal of The Royal Society Interface - Royal Society

Nuclear magnetic resonance analysis of protein–DNA interactions | Journal of The Royal Society Interface Royal Society
Nuclear magnetic resonance analysis of protein–DNA interactions | Journal of The Royal Society Interface - Royal Society
More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
J-Edited DIffusional Proton Nuclear Magnetic Resonance Spectroscopic Measurement of Glycoprotein and ... - American Chemical Society J-Edited DIffusional Proton Nuclear Magnetic Resonance Spectroscopic Measurement of Glycoprotein and ... American Chemical Society J-Edited DIffusional Proton Nuclear Magnetic Resonance Spectroscopic Measurement of Glycoprotein and ... - American Chemical Society More...	nmrlearner	Online News	0	04-06-2023 05:43 PM
1H Nuclear Magnetic Resonance Spectroscopy-Based Methods for the Quantification of Proteins in Urine - American Chemical Society 1H Nuclear Magnetic Resonance Spectroscopy-Based Methods for the Quantification of Proteins in Urine American Chemical Society 1H Nuclear Magnetic Resonance Spectroscopy-Based Methods for the Quantification of Proteins in Urine - American Chemical Society More...	nmrlearner	Online News	0	03-20-2023 03:27 AM
Probing Ligand Binding Sites on Large Proteins by Nuclear Magnetic Resonance Spectroscopy of Genetically ... - American Chemical Society Probing Ligand Binding Sites on Large Proteins by Nuclear Magnetic Resonance Spectroscopy of Genetically ... American Chemical Society Probing Ligand Binding Sites on Large Proteins by Nuclear Magnetic Resonance Spectroscopy of Genetically ... - American Chemical Society More...	nmrlearner	Online News	0	03-18-2023 11:29 AM
[NMR] 53rd Royal Society of Chemistry ESR Group Meeting - deadline approaching #DNPNMR #EPR From The DNP-NMR Blog: 53rd Royal Society of Chemistry ESR Group Meeting - deadline approaching #DNPNMR #EPR Dear Colleagues, the registration deadline for the 53rd Annual Meeting of the ESR Group of the Royal Society of Chemistry is on 21 February. If you plan to attend, please register here:	nmrlearner	News from NMR blogs	0	02-29-2020 09:52 PM
Diamond sensor atom scale imaging proposed - Royal Society of Chemistry http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcRFP1K3qRZlrf4jsdAqxFe6q2U7HD4RG5o6wUBZDbWp27DNh2c2gPuZDRtzNFIIxwA8weJKuXiA Royal Society of Chemistry <img alt="" height="1" width="1"> Diamond sensor atom scale imaging proposed Royal Society of Chemistry ... is still theoretical, would in principle allow detailed interrogation at the atomic scale of structures such as the binding sites of proteins, which are not amenable to bulk analytical methods such as x-ray crystallography or nuclear magnetic ... Diamond sensor atom scale imaging proposed - Royal Society of Chemistry	nmrlearner	Online News	0	01-23-2015 03:14 AM
VII Biennial Meeting of the NMR Group of the Spanish Royal Society of Chemistry VII Biennial Meeting of the NMR Group of the Spanish Royal Society of Chemistry http://www.spectroscopynow.com/common/images/thumbnails/1453c5db8b4.jpgVII GERMN Biennial Meeting / IV Iberian NMR Meeting / VI Iberoamerican NMR Meeting More...	nmrlearner	Conferences	0	04-07-2014 06:59 PM
[NMR images] 2001~: Editor, Journal of the Korean Magnetic Resonance Society http://www.postech.ac.kr/chem/nmrlab/image/member/professor.jpg 14/03/2014 7:34:41 PM GMT 2001~: Editor, Journal of the Korean Magnetic Resonance Society More...	nmrlearner	NMR pictures	0	03-14-2014 07:34 PM
Royal Society of Chemistry NMR DG Christmas Meeting Royal Society of Chemistry NMR DG Christmas Meeting http://ecx.images-amazon.com/images/I/41hegVr8m4L._BO2,204,203,200_PIsitb-sticker-arrow-click,TopRight,35,-76_AA300_SH20_OU01_.jpg amazon.com 29/10/2011 12:16:35 AM GMT More...	nmrlearner	Conferences	0	11-05-2011 09:21 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off