NMR Studies of the Structure and Dynamics of Membrane-Bound Bacteriophage Pf1 coat protein - Science

		BioNMR > NMR community > Online News
NMR Studies of the Structure and Dynamics of Membrane-Bound Bacteriophage Pf1 coat protein - Science

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

11-16-2024, 05:00 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

NMR Studies of the Structure and Dynamics of Membrane-Bound Bacteriophage Pf1 coat protein - Science

NMR Studies of the Structure and Dynamics of Membrane-Bound Bacteriophage Pf1 coat protein - Science

NMR Studies of the Structure and Dynamics of Membrane-Bound Bacteriophage Pf1 coat protein Science Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR paper] NMR assignments for the insertion domain of bacteriophage CUS-3 coat protein. NMR assignments for the insertion domain of bacteriophage CUS-3 coat protein. Related Articles NMR assignments for the insertion domain of bacteriophage CUS-3 coat protein. Biomol NMR Assign. 2015 Feb 19; Authors: Tripler TN, Maciejewski MW, Teschke CM, Alexandrescu AT Abstract CUS-3 is a P22-like tailed dsDNA bacteriophage that infects Escherichia coli serotype K1. The CUS-3 coat protein, which forms the icosahedral capsid, has a conserved HK97-fold but with a non-conserved accessory domain known as the insertion domain...	nmrlearner	Journal club	0	02-20-2015 10:09 PM
[NMR paper] Multiple Functional Roles of the Accessory I-Domain of Bacteriophage P22 Coat Protein Revealed by NMR Structure and CryoEM Modeling. Multiple Functional Roles of the Accessory I-Domain of Bacteriophage P22 Coat Protein Revealed by NMR Structure and CryoEM Modeling. Related Articles Multiple Functional Roles of the Accessory I-Domain of Bacteriophage P22 Coat Protein Revealed by NMR Structure and CryoEM Modeling. Structure. 2014 May 14; Authors: Rizzo AA, Suhanovsky MM, Baker ML, Fraser LC, Jones LM, Rempel DL, Gross ML, Chiu W, Alexandrescu AT, Teschke CM Abstract Some capsid proteins built on the ubiquitous HK97-fold have accessory domains imparting specific...	nmrlearner	Journal club	0	05-20-2014 11:10 PM
Multiple Functional Roles of the Accessory I-Domain of Bacteriophage P22 Coat Protein Revealed by NMR Structure and CryoEM Modeling Multiple Functional Roles of the Accessory I-Domain of Bacteriophage P22 Coat Protein Revealed by NMR Structure and CryoEM Modeling Publication date: Available online 15 May 2014 Source:Structure</br> Author(s): AlessandroA. Rizzo , MargaretM. Suhanovsky , MatthewL. Baker , LaTashaC.R. Fraser , LisaM. Jones , DonL. Rempel , MichaelL. Gross , Wah Chiu , AndreiT. Alexandrescu , Carolyn*M. Teschke</br> Some capsid proteins built on the ubiquitous HK97-fold have accessory domains imparting specific functions. Bacteriophage P22 coat protein has a unique...	nmrlearner	Journal club	0	05-15-2014 07:23 PM
[NMR paper] Structure of the coat protein in Pf1 bacteriophage determined by solid-state NMR spec Structure of the coat protein in Pf1 bacteriophage determined by solid-state NMR spectroscopy. Related Articles Structure of the coat protein in Pf1 bacteriophage determined by solid-state NMR spectroscopy. J Mol Biol. 2004 Aug 13;341(3):869-79 Authors: Thiriot DS, Nevzorov AA, Zagyanskiy L, Wu CH, Opella SJ The atomic resolution structure of Pf1 coat protein determined by solid-state NMR spectroscopy of magnetically aligned filamentous bacteriophage particles in solution is compared to the structures previously determined by X-ray fiber and...	nmrlearner	Journal club	0	11-24-2010 10:01 PM
[NMR paper] Structure of the coat protein in fd filamentous bacteriophage particles determined by Structure of the coat protein in fd filamentous bacteriophage particles determined by solid-state NMR spectroscopy. Related Articles Structure of the coat protein in fd filamentous bacteriophage particles determined by solid-state NMR spectroscopy. Proc Natl Acad Sci U S A. 2003 May 27;100(11):6458-63 Authors: Zeri AC, Mesleh MF, Nevzorov AA, Opella SJ The atomic resolution structure of fd coat protein determined by solid-state NMR spectroscopy of magnetically aligned filamentous bacteriophage particles differs from that previously determined...	nmrlearner	Journal club	0	11-24-2010 09:01 PM
[NMR paper] Structure and dynamics of bacteriophage IKe major coat protein in MPG micelles by sol Structure and dynamics of bacteriophage IKe major coat protein in MPG micelles by solution NMR. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-acspubs.jpg Related Articles Structure and dynamics of bacteriophage IKe major coat protein in MPG micelles by solution NMR. Biochemistry. 1996 Apr 23;35(16):5145-57 Authors: Williams KA, Farrow NA, Deber CM, Kay LE The structure and dynamics of the 53-residue filamentous bacteriophage IKe major coat protein in fully protonated myristoyllysophosphatidylglycerol (MPG)...	nmrlearner	Journal club	0	08-22-2010 02:27 PM
[NMR paper] NMR studies of the major coat protein of bacteriophage M13. Structural information of NMR studies of the major coat protein of bacteriophage M13. Structural information of gVIIIp in dodecylphosphocholine micelles. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif Related Articles NMR studies of the major coat protein of bacteriophage M13. Structural information of gVIIIp in dodecylphosphocholine micelles. Eur J Biochem. 1995 Sep 1;232(2):490-500 Authors: Papavoine CH, Aelen JM, Konings RN, Hilbers CW, Van de Ven FJ The membrane-bound...	nmrlearner	Journal club	0	08-22-2010 03:50 AM
[NMR paper] NMR studies of the structure and dynamics of membrane-bound bacteriophage Pf1 coat pr NMR studies of the structure and dynamics of membrane-bound bacteriophage Pf1 coat protein. Related Articles NMR studies of the structure and dynamics of membrane-bound bacteriophage Pf1 coat protein. Science. 1991 May 31;252(5010):1303-5 Authors: Shon KJ, Kim Y, Colnago LA, Opella SJ Filamentous bacteriophage coat protein undergoes a remarkable structural transition during the viral assembly process as it is transferred from the membrane environment of the cell, where it spans the phospholipid bilayer, to the newly extruded virus particles....	nmrlearner	Journal club	0	08-21-2010 11:16 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off