NMR Structure and Mutagenesis of the Third Bir Domain of the Inhibitor of Apoptosis Protein XIAP - ScienceDirect.com

		BioNMR > NMR community > Online News
NMR Structure and Mutagenesis of the Third Bir Domain of the Inhibitor of Apoptosis Protein XIAP - ScienceDirect.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-05-2024, 03:51 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

NMR Structure and Mutagenesis of the Third Bir Domain of the Inhibitor of Apoptosis Protein XIAP - ScienceDirect.com

NMR Structure and Mutagenesis of the Third Bir Domain of the Inhibitor of Apoptosis Protein XIAP - ScienceDirect.com

NMR Structure and Mutagenesis of the Third Bir Domain of the Inhibitor of Apoptosis Protein XIAP ScienceDirect.com Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
NMR structure of Streptomyces killer toxin-like protein, SKLP: further evidence for the wide distribution of single-domain ... - ScienceDirect NMR structure of Streptomyces killer toxin-like protein, SKLP: further evidence for the wide distribution of single-domain ... - ScienceDirect NMR structure of Streptomyces killer toxin-like protein, SKLP: further evidence for the wide distribution of single-domain ... ScienceDirect Read here	nmrlearner	Online News	0	02-17-2024 12:31 AM
Apoptosis Inducing Factor Binding Protein PGAM5 TriggersMitophagic Cell Death That Is Inhibited by the Ubiquitin Ligase Activityof X-Linked Inhibitor of Apoptosis Apoptosis Inducing Factor Binding Protein PGAM5 TriggersMitophagic Cell Death That Is Inhibited by the Ubiquitin Ligase Activityof X-Linked Inhibitor of Apoptosis http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.6b00306/20160601/images/medium/bi-2016-003067_0010.gif Biochemistry DOI: 10.1021/acs.biochem.6b00306 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/B9hzsL2NEXs More...	nmrlearner	Journal club	0	06-03-2016 03:35 AM
[NMR paper] NMR structure of the apoptosis- and inflammation-related NALP1 pyrin domain. NMR structure of the apoptosis- and inflammation-related NALP1 pyrin domain. Related Articles NMR structure of the apoptosis- and inflammation-related NALP1 pyrin domain. Structure. 2003 Oct;11(10):1199-205 Authors: Hiller S, Kohl A, Fiorito F, Herrmann T, Wider G, Tschopp J, Grütter MG, Wüthrich K Signaling in apoptosis and inflammation is often mediated by proteins of the death domain superfamily in the Fas/FADD/Caspase-8 or the Apaf-1/Caspase-9 pathways. This superfamily currently comprises the death domain (DD), death effector domain...	nmrlearner	Journal club	0	11-24-2010 09:16 PM
[NMR paper] NMR structure and mutagenesis of the third Bir domain of the inhibitor of apoptosis p NMR structure and mutagenesis of the third Bir domain of the inhibitor of apoptosis protein XIAP. Related Articles NMR structure and mutagenesis of the third Bir domain of the inhibitor of apoptosis protein XIAP. J Biol Chem. 2000 Oct 27;275(43):33777-81 Authors: Sun C, Cai M, Meadows RP, Xu N, Gunasekera AH, Herrmann J, Wu JC, Fesik SW The inhibitor of apoptosis proteins (IAPs) regulate the caspase family of cysteine proteases, which play an important role in the execution of programmed cell death. Human X-linked inhibitor of apoptosis...	nmrlearner	Journal club	0	11-19-2010 08:29 PM
[NMR paper] NMR structure and mutagenesis of the inhibitor-of-apoptosis protein XIAP. NMR structure and mutagenesis of the inhibitor-of-apoptosis protein XIAP. Related Articles NMR structure and mutagenesis of the inhibitor-of-apoptosis protein XIAP. Nature. 1999 Oct 21;401(6755):818-22 Authors: Sun C, Cai M, Gunasekera AH, Meadows RP, Wang H, Chen J, Zhang H, Wu W, Xu N, Ng SC, Fesik SW The inhibitor-of-apoptosis (IAP) family of proteins, originally identified in baculoviruses, regulate programmed cell death in a variety of organisms. IAPs inhibit specific enzymes (caspases) in the death cascade and contain one to three...	nmrlearner	Journal club	0	11-18-2010 08:31 PM
[NMR paper] NMR structure and mutagenesis of the N-terminal Dbl homology domain of the nucleotide NMR structure and mutagenesis of the N-terminal Dbl homology domain of the nucleotide exchange factor Trio. Related Articles NMR structure and mutagenesis of the N-terminal Dbl homology domain of the nucleotide exchange factor Trio. Cell. 1998 Oct 16;95(2):269-77 Authors: Liu X, Wang H, Eberstadt M, Schnuchel A, Olejniczak ET, Meadows RP, Schkeryantz JM, Janowick DA, Harlan JE, Harris EA, Staunton DE, Fesik SW Guanine nucleotide exchange factors for the Rho family of GTPases contain a Dbl homology (DH) domain responsible for catalysis and a...	nmrlearner	Journal club	0	11-17-2010 11:15 PM
[NMR paper] NMR structure and mutagenesis of the FADD (Mort1) death-effector domain. NMR structure and mutagenesis of the FADD (Mort1) death-effector domain. Related Articles NMR structure and mutagenesis of the FADD (Mort1) death-effector domain. Nature. 1998 Apr 30;392(6679):941-5 Authors: Eberstadt M, Huang B, Chen Z, Meadows RP, Ng SC, Zheng L, Lenardo MJ, Fesik SW When activated, membrane-bound receptors for Fas and tumour-necrosis factor initiate programmed cell death by recruiting the death domain of the adaptor protein FADD to the membrane. FADD then activates caspase 8 (also known as FLICE or MACH) through an...	nmrlearner	Journal club	0	11-17-2010 11:06 PM
[NMR paper] NMR structure and mutagenesis of the Fas (APO-1/CD95) death domain. NMR structure and mutagenesis of the Fas (APO-1/CD95) death domain. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.nature.com-images-lo_nature.gif Related Articles NMR structure and mutagenesis of the Fas (APO-1/CD95) death domain. Nature. 1996 Dec 19-26;384(6610):638-41 Authors: Huang B, Eberstadt M, Olejniczak ET, Meadows RP, Fesik SW Programmed cell death (apoptosis) mediated by the cytokine receptor Fas is critical for the removal of autoreactive T cells, the mechanism of immune privilege, and for maintenance of immune-system...	nmrlearner	Journal club	0	08-22-2010 02:20 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off