NMR Structure of the ?-Hemoglobin Stabilizing Protein: INSIGHTS INTO CONFORMATIONAL HETEROGENEITY AND ... - ScienceDirect.com

		BioNMR > NMR community > Online News
NMR Structure of the ?-Hemoglobin Stabilizing Protein: INSIGHTS INTO CONFORMATIONAL HETEROGENEITY AND ... - ScienceDirect.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

04-08-2024, 03:06 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

NMR Structure of the ?-Hemoglobin Stabilizing Protein: INSIGHTS INTO CONFORMATIONAL HETEROGENEITY AND ... - ScienceDirect.com

NMR Structure of the ?-Hemoglobin Stabilizing Protein: INSIGHTS INTO CONFORMATIONAL HETEROGENEITY AND ... - ScienceDirect.com

NMR Structure of the ?-Hemoglobin Stabilizing Protein: INSIGHTS INTO CONFORMATIONAL HETEROGENEITY AND ... ScienceDirect.com Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Contribution of protein conformational heterogeneity to NMR lineshapes at cryogenic temperatures Contribution of protein conformational heterogeneity to NMR lineshapes at cryogenic temperatures Xu YiKeith J. FritzschingRivkah RogawskiYunyao XuAnn E. McDermottaDepartment of Chemistry, Columbia University, New York, NY 1002... Date: Proceedings of the National Academy of Sciences, Volume 121, Issue 8, February 2024. Read More PNAS:	nmrlearner	Journal club	0	02-21-2024 11:12 PM
[NMR paper] Contribution of protein conformational heterogeneity to NMR lineshapes at cryogenic temperatures Contribution of protein conformational heterogeneity to NMR lineshapes at cryogenic temperatures While low-temperature Nuclear Magnetic Resonance (NMR) holds great promise for the analysis of unstable samples and for sensitizing NMR detection, spectral broadening in frozen protein samples is a common experimental challenge. One hypothesis explaining the additional linewidth is that a variety of conformations are in rapid equilibrium at room temperature and become frozen, creating an inhomogeneous distribution at cryogenic temperatures. Here, we investigate conformational heterogeneity...	nmrlearner	Journal club	0	02-16-2024 07:14 AM
Elucidating the mechanisms underlying protein conformational switching using NMR spectroscopy - ScienceDirect Elucidating the mechanisms underlying protein conformational switching using NMR spectroscopy - ScienceDirect Elucidating the mechanisms underlying protein conformational switching using NMR spectroscopy ScienceDirect Read here	nmrlearner	Online News	0	12-28-2023 10:50 PM
[NMR paper] Contribution of protein conformational heterogeneity to NMR lineshapes at cryogenic temperatures Contribution of protein conformational heterogeneity to NMR lineshapes at cryogenic temperatures While low temperature NMR holds great promise for the analysis of unstable samples and for sensitizing NMR detection, spectral broadening in frozen protein samples is a common experimental challenge. One hypothesis explaining the additional linewidth is that a variety of conformations are in rapid equilibrium at room temperature and become frozen, creating an inhomogeneous distribution at cryogenic temperatures. Here we investigate conformational heterogeneity by measuring the backbone...	nmrlearner	Journal club	0	02-07-2023 04:23 PM
[ASAP] Molecular Insights into Conformational Heterogeneity and Enhanced Structural Integrity of Helicobacter pylori DNA Binding Protein Hup at Low pH Molecular Insights into Conformational Heterogeneity and Enhanced Structural Integrity of Helicobacter pylori DNA Binding Protein Hup at Low pH https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.1c00395/20211019/images/medium/bi1c00395_0011.gif Biochemistry DOI: 10.1021/acs.biochem.1c00395 http://feeds.feedburner.com/~r/acs/bichaw/~4/62ZMeakStQQ More...	nmrlearner	Journal club	0	10-20-2021 06:28 AM
[NMR paper] NMR Elucidation of Monomer-dimer transition and Conformational heterogeneity in Histone-like DNA binding protein of Helicobacter pylori (Hup). NMR Elucidation of Monomer-dimer transition and Conformational heterogeneity in Histone-like DNA binding protein of Helicobacter pylori (Hup). http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--media.wiley.com-assets-7315-19-Wiley_FullText_120x30_orange.png Related Articles NMR Elucidation of Monomer-dimer transition and Conformational heterogeneity in Histone-like DNA binding protein of Helicobacter pylori (Hup). Magn Reson Chem. 2017 Dec 14;: Authors: Jaiswal N, Raikwal N, Pandey H, Agarwal N, Arora A, Poluri KM, Kumar D ...	nmrlearner	Journal club	0	12-15-2017 09:07 PM
Insights into the interaction of discodermolide and docetaxel with tubulin. Mapping the binding sites of microtubule-stabilizing agents by using an integrated NMR and computational approach. Insights into the interaction of discodermolide and docetaxel with tubulin. Mapping the binding sites of microtubule-stabilizing agents by using an integrated NMR and computational approach. Insights into the interaction of discodermolide and docetaxel with tubulin. Mapping the binding sites of microtubule-stabilizing agents by using an integrated NMR and computational approach. ACS Chem Biol. 2011 May 3; Authors: Canales A, R Salarichs J, Trigili C, Nieto L, Coderch C, Andreu JM, Paterson I, Jimenez-Barbero J, Díaz Pereira JF The binding...	nmrlearner	Journal club	0	05-06-2011 02:00 AM
[NMR paper] NMR structure of the alpha-hemoglobin stabilizing protein: insights into conformation NMR structure of the alpha-hemoglobin stabilizing protein: insights into conformational heterogeneity and binding. Related Articles NMR structure of the alpha-hemoglobin stabilizing protein: insights into conformational heterogeneity and binding. J Biol Chem. 2004 Aug 13;279(33):34963-70 Authors: Santiveri CM, Pérez-Cañadillas JM, Vadivelu MK, Allen MD, Rutherford TJ, Watkins NA, Bycroft M The structure of alpha-hemoglobin stabilizing protein (AHSP), a molecular chaperone for free alpha-hemoglobin, has been determined using NMR spectroscopy....	nmrlearner	Journal club	0	11-24-2010 09:51 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off