NMR-Based Methods for Protein Analysis - ACS Publications

		BioNMR > NMR community > Online News
NMR-Based Methods for Protein Analysis - ACS Publications

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

03-17-2025, 06:18 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,996

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

NMR-Based Methods for Protein Analysis - ACS Publications

NMR-Based Methods for Protein Analysis - ACS Publications

NMR-Based Methods for Protein Analysis ACS Publications Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
1H Nuclear Magnetic Resonance Spectroscopy-Based Methods for the Quantification of Proteins in Urine - ACS Publications 1H Nuclear Magnetic Resonance Spectroscopy-Based Methods for the Quantification of Proteins in Urine ACS Publications 1H Nuclear Magnetic Resonance Spectroscopy-Based Methods for the Quantification of Proteins in Urine - ACS Publications More...	nmrlearner	Online News	0	11-21-2024 12:00 PM
On the Analytical Superiority of 1D NMR for Fingerprinting the Higher Order Structure of Protein Therapeutics Compared to Multidimensional NMR Methods - ACS Publications On the Analytical Superiority of 1D NMR for Fingerprinting the Higher Order Structure of Protein Therapeutics Compared to Multidimensional NMR Methods - ACS Publications On the Analytical Superiority of 1D NMR for Fingerprinting the Higher Order Structure of Protein Therapeutics Compared to Multidimensional NMR Methods ACS Publications Read here	nmrlearner	Online News	0	10-12-2024 02:58 AM
Fragment-Based Ligand Discovery Using Protein-Observed - ACS Publications Fragment-Based Ligand Discovery Using Protein-Observed - ACS Publications Fragment-Based Ligand Discovery Using Protein-Observed ACS Publications Read here	nmrlearner	Online News	0	10-11-2024 02:40 AM
[NMR paper] NMR-Based Methods for Protein Analysis. NMR-Based Methods for Protein Analysis. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-pubmed-acspubs.jpg Related Articles NMR-Based Methods for Protein Analysis. Anal Chem. 2021 Jan 13;: Authors: Hu Y, Cheng K, He L, Zhang X, Jiang B, Jiang L, Li C, Wang G, Yang Y, Liu M Abstract Nuclear magnetic resonance (NMR) spectroscopy is a well-established method for analyzing protein structure, interaction, and dynamics at atomic resolution and in various sample states including solution...	nmrlearner	Journal club	0	01-15-2021 04:25 PM
[NMR images] Methods in Protein Structure and Stability Analysis: NMR and EPR ... http://i43.tower.com/images/mm101430301/methods-in-protein-structure-stability-analysis-nmr-epr-eugene-a-permyakov-hardcover-cover-art.jpg 8/04/2014 7:46:05 AM GMT Methods in Protein Structure and Stability Analysis: NMR and EPR ... More...	nmrlearner	NMR pictures	0	04-08-2014 07:45 AM
[NMR paper] Automated analysis of protein NMR assignments using methods from artificial intellige Automated analysis of protein NMR assignments using methods from artificial intelligence. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Automated analysis of protein NMR assignments using methods from artificial intelligence. J Mol Biol. 1997 Jun 20;269(4):592-610 Authors: Zimmerman DE, Kulikowski CA, Huang Y, Feng W, Tashiro M, Shimotakahara S, Chien C, Powers R, Montelione GT An expert system for determining resonance assignments from NMR spectra of proteins is...	nmrlearner	Journal club	0	08-22-2010 03:31 PM
[NMR paper] Automated analysis of protein NMR assignments using methods from artificial intellige Automated analysis of protein NMR assignments using methods from artificial intelligence. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Automated analysis of protein NMR assignments using methods from artificial intelligence. J Mol Biol. 1997 Jun 20;269(4):592-610 Authors: Zimmerman DE, Kulikowski CA, Huang Y, Feng W, Tashiro M, Shimotakahara S, Chien C, Powers R, Montelione GT An expert system for determining resonance assignments from NMR spectra of proteins is...	nmrlearner	Journal club	0	08-22-2010 03:03 PM
Structure-oriented methods for protein NMR data analysis Structure-oriented methods for protein NMR data analysis Publication year: 2010 Source: Progress in Nuclear Magnetic Resonance Spectroscopy, In Press, Accepted Manuscript, Available online 3 March 2010</br> Guillermo A., Bermejo , Miguel, Llinás</br> More...	nmrlearner	Journal club	0	08-16-2010 03:50 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off