Mega-scale experimental analysis of protein folding stability in ... - Nature.com

		BioNMR > NMR community > Online News
Mega-scale experimental analysis of protein folding stability in ... - Nature.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-21-2023, 07:58 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,734

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Mega-scale experimental analysis of protein folding stability in ... - Nature.com

Mega-scale experimental analysis of protein folding stability in ... - Nature.com

Mega-scale experimental analysis of protein folding stability in ... Nature.com Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
In-cell protein stability promotes antimicrobial resistance of metallo-? ... - Nature.com In-cell protein stability promotes antimicrobial resistance of metallo-? ... - Nature.com In-cell protein stability promotes antimicrobial resistance of metallo-? ... Nature.com Read here	nmrlearner	Online News	0	05-15-2023 09:27 PM
Protein structure and folding pathway prediction based on remote ... - Nature.com Protein structure and folding pathway prediction based on remote ... - Nature.com Protein structure and folding pathway prediction based on remote ... Nature.com Read here	nmrlearner	Online News	0	03-05-2023 02:55 PM
Halogenation of tyrosine perturbs large-scale protein self-organization - Nature.com Halogenation of tyrosine perturbs large-scale protein self-organization - Nature.com Halogenation of tyrosine perturbs large-scale protein self-organization Nature.com Read here	nmrlearner	Online News	0	08-18-2022 09:46 AM
Spatial organization of hydrophobic and charged residues affects protein thermal stability and binding affinity \| Scientific Reports - Nature.com Spatial organization of hydrophobic and charged residues affects protein thermal stability and binding affinity \| Scientific Reports - Nature.com Spatial organization of hydrophobic and charged residues affects protein thermal stability and binding affinity \| Scientific Reports Nature.com Read here	nmrlearner	Online News	0	07-18-2022 03:28 PM
DAXX represents a new type of protein-folding enabler - Nature.com DAXX represents a new type of protein-folding enabler - Nature.com DAXX represents a new type of protein-folding enabler Nature.com Read here	nmrlearner	Online News	0	08-21-2021 06:41 AM
[NMR paper] Comparative Assessment of NMR Probes for the Experimental Description of Protein Folding Pathways with High-Pressure NMR Comparative Assessment of NMR Probes for the Experimental Description of Protein Folding Pathways with High-Pressure NMR Multidimensional NMR intrinsically provides multiple probes that can be used for deciphering the folding pathways of proteins: NH amide and C?H? groups are strategically located on the backbone of the protein, while CH(3) groups, on the side-chain of methylated residues, are involved in important stabilizing interactions in the hydrophobic core. Combined with high hydrostatic pressure, these observables provide a powerful tool to explore the conformational landscapes of...	nmrlearner	Journal club	0	08-08-2021 01:56 AM
[NMR paper] NMR Spectroscopy of Soluble Protein Complexes at One Mega-Dalton and Beyond. NMR Spectroscopy of Soluble Protein Complexes at One Mega-Dalton and Beyond. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--media.wiley.com-assets-2250-98-WileyOnlineLibrary-Button_120x27px_FullText.gif Related Articles NMR Spectroscopy of Soluble Protein Complexes at One Mega-Dalton and Beyond. Angew Chem Int Ed Engl. 2013 Jul 19; Authors: Mainz A, Religa TL, Sprangers R, Linser R, Kay LE, Reif B Abstract Bigger is better: Sequential backbone assignments are obtained by NMR spectroscopy for a 1 MDa proteasome...	nmrlearner	Journal club	0	07-23-2013 09:52 PM
[NMR paper] Protein folding and stability investigated by fluorescence, circular dichroism (CD), Protein folding and stability investigated by fluorescence, circular dichroism (CD), and nuclear magnetic resonance (NMR) spectroscopy: the flavodoxin story. Related Articles Protein folding and stability investigated by fluorescence, circular dichroism (CD), and nuclear magnetic resonance (NMR) spectroscopy: the flavodoxin story. J Biotechnol. 2000 May 26;79(3):281-98 Authors: van Mierlo CP, Steensma E In this review, the experimental results obtained on the folding and stability of Azotobacter vinelandii flavodoxin are summarised. By doing...	nmrlearner	Journal club	0	11-18-2010 09:15 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off