Measuring the shape of proteins just got easier thanks to mathematics - MIT Technology Review

		BioNMR > NMR community > Online News
Measuring the shape of proteins just got easier thanks to mathematics - MIT Technology Review

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

04-09-2020, 07:27 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,733

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Measuring the shape of proteins just got easier thanks to mathematics - MIT Technology Review

Measuring the shape of proteins just got easier thanks to mathematics - MIT Technology Review

Measuring the shape of proteins just got easier thanks to mathematics MIT Technology Review Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Measuring the shape of proteins just got easier thanks to mathematics - MIT Technology Review Measuring the shape of proteins just got easier thanks to mathematics - MIT Technology Review Measuring the shape of proteins just got easier thanks to mathematics MIT Technology Review Read here	nmrlearner	Online News	0	02-29-2020 09:52 PM
Scientists alter membrane proteins to make them easier to study - MIT News Scientists alter membrane proteins to make them easier to study - MIT News Scientists alter membrane proteins to make them easier to study MIT NewsMIT researchers have developed a way to make membrane-embedded proteins water-soluble by swapping their some of their hydrophobic amino acids for ... Read here	nmrlearner	Online News	0	01-07-2019 05:49 AM
How Proteins Wiggle, Jiggle, and Shape-shift by the Hour Is Central to Figuring Out How Circadian Clocks Work - Sleep Review How Proteins Wiggle, Jiggle, and Shape-shift by the Hour Is Central to Figuring Out How Circadian Clocks Work - Sleep Review <img alt="" height="1" width="1"> How Proteins Wiggle, Jiggle, and Shape-shift by the Hour Is Central to Figuring Out How Circadian Clocks Work Sleep Review Researchers made a solution of these proteins and adenosine triphosphate (ATP), food for the proteins, to create a circadian clock that functioned for weeks. LiWang's structural biology lab uses nuclear magnetic resonance (NMR) spectroscopy, the parent ... Read here	nmrlearner	Online News	0	03-30-2018 06:40 PM
How Proteins Shape-Shift By the Hour is Central to Figuring Out How Circadian Clocks Work - Technology Networks How Proteins Shape-Shift By the Hour is Central to Figuring Out How Circadian Clocks Work - Technology Networks http://www.bionmr.com//t1.gstatic.com/images?q=tbn:ANd9GcRg0WAoEGzw2LwaFyjKeqOMz4uoHk--QPza_7glhqU_Xa0E3Ykair9gEopZ9V_AbqYeVlFlQa9x Technology Networks <img alt="" height="1" width="1"> How Proteins Shape-Shift By the Hour is Central to Figuring Out How Circadian Clocks Work Technology Networks Cyanobacterial circadian clock proteins are unique because they can be reconstituted within a test tube in the absence of live cells. Researchers made a solution of these proteins and...	nmrlearner	Online News	0	02-20-2018 10:04 AM
Motion capture-like technology for tracking protein shape ... - Science Daily <img alt="" height="1" width="1"> Motion capture-like technology for tracking protein shape ... Science Daily Researchers have demonstrated a motion capture-like technology that tracks how proteins fold and change shape using fluorescent probes. The research could lead to improvements in drugs used to treat neurodegenerative diseases, as well as new methods of ... and more » Motion capture-like technology for tracking protein shape ... - Science Daily More...	nmrlearner	Online News	0	02-14-2018 02:43 AM
Signal Intelligence - MIT Technology Review http://www.bionmr.com//t3.gstatic.com/images?q=tbn:ANd9GcQuuDsGoZ14X1sGWyonV-KRBcOzvMPqrignY_7ZQN5n-ZAAz7h-oqzPoiIwo0ogp1ph35CoTT1e MIT Technology Review <img alt="" height="1" width="1"> Signal Intelligence MIT Technology Review ... to making it possible to compress terabytes of data quickly, Katabi says, the algorithm is likely to be useful for advanced MRI technology, graphics, astronomy, spectroscopy, and methods of studying protein structure with nuclear magnetic resonance. Signal Intelligence - MIT Technology Review	nmrlearner	Online News	0	10-20-2015 07:59 AM
Measuring Protein Shape and Topology using Mass Spectrometry - SelectScience.net (press release) (registration) Measuring Protein Shape and Topology using Mass Spectrometry - SelectScience.net (press release) (registration) http://www.bionmr.com//t1.gstatic.com/images?q=tbn:ANd9GcTJN0FvanzEPGxegxaSHrwAQdV_tG65PXhoxR-R9YKr6b3-ebGvI_37E_D7cv_l8KT7P3z5Egk SelectScience.net (press release) (registration) <img alt="" height="1" width="1"> Measuring Protein Shape and Topology using Mass Spectrometry SelectScience.net (press release) (registration) NMR, x-ray and other technologies in her center can analyze some proteins and protein complexes, but are limited if the protein is in a messy mixture....	nmrlearner	Online News	0	08-12-2015 10:04 PM
A Better Way to Probe the Brain - MIT Technology Review http://www.bionmr.com//t1.gstatic.com/images?q=tbn:ANd9GcRWsRasqpNXw1m7dymmJGKSGDHBdx-NuHeB1mp0VAA0vOkA2TfEf0LMRqIAPhZzibkpnRaSOUM MIT Technology Review <img alt="" height="1" width="1"> A Better Way to Probe the Brain MIT Technology Review Anikeeva studied biophysics at the Saint Petersburg State Polytechnic University; on an exchange program at the Swiss Federal Institute of Technology in Zurich, she learned to analyze the structure of proteins using nuclear magnetic resonance spectroscopy. and more » A Better Way to Probe the Brain - MIT Technology Review	nmrlearner	Online News	0	04-21-2015 12:33 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off