Mass Spec Dominating Protein Profiling - Genetic Engineering News

		BioNMR > NMR community > Online News
Mass Spec Dominating Protein Profiling - Genetic Engineering News

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

09-01-2011, 07:23 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,714

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Mass Spec Dominating Protein Profiling - Genetic Engineering News

Mass Spec Dominating Protein Profiling
Genetic Engineering News
â??In the field of proteomics today, the current methods of choice for molecular characterization are liquid chromatography combined with mass spectrometry, tandem mass spec, and nuclear magnetic resonance mass spectrometry,â?? said James Langridge, Ph.D., ...

Mass Spec Dominating Protein Profiling - Genetic Engineering News
More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Protein Interactions In Membranes - Chemical & Engineering News Protein Interactions In Membranes - Chemical & Engineering News http://nt2.ggpht.com/news/tbn/EsMJPExWlLTDnM/6.jpg Chemical & Engineering News <img alt="" height="1" width="1" /> Protein Interactions In Membranes Chemical & Engineering News When researchers use NMR to study protein-complex formation in cell-membrane mimics called micelles, they run the risk of misinterpreting shifts in the spectra. For instance, protein A and protein B might just appear to be associating because the ...	nmrlearner	Online News	0	11-29-2011 04:49 AM
Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... - Genetic Engineering News http://nt1.ggpht.com/news/tbn/pbujffOLTN-5EM/6.jpg SunHerald.com <img alt="" height="1" width="1" /> Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... Genetic Engineering News Bruker and Lawrence Berkeley National Laboratory are collaborating to develop structural biology methods and tools that integrate small-angle x-ray scattering (SAXS) technology with nuclear magnetic resonance (NMR). The aim is to generate a set of data ... Bruker and Lawrence Berkeley National Laboratory Collaborate on Novel ...MarketWatch (press release) all 14 news articles »	nmrlearner	Online News	0	11-11-2011 08:26 AM
Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... - Genetic Engineering News Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... - Genetic Engineering News http://nt1.ggpht.com/news/tbn/pbujffOLTN-5EM/6.jpg SunHerald.com <img alt="" height="1" width="1" /> Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... Genetic Engineering News The aim is to generate a set of data analysis algorithms for determining the structures of larger, multi-domain proteins and protein complexes with DNA, RNA or other proteins. The organizations claim that combining the NMR-derived 3-dimensional atomic ... Bruker and Lawrence...	nmrlearner	Online News	0	11-10-2011 08:09 PM
Proteins Reveal Their Secrets Under Pressure - Chemical & Engineering News Proteins Reveal Their Secrets Under Pressure - Chemical & Engineering News http://nt3.ggpht.com/news/tbn/w_rlCzy1Ripc7M/6.jpg Chemical & Engineering News <img alt="" height="1" width="1" /> Proteins Reveal Their Secrets Under Pressure Chemical & Engineering News With the device, the researchers attempted an NMR experiment they call pressure perturbation transient state spectroscopy. The experiment begins with a pressure spike that unfolds a protein in solution in an NMR sample tube; then the protein refolds ...	nmrlearner	Online News	0	08-02-2011 12:25 AM
Elevating Oxygen - Chemical & Engineering News <img alt="" height="1" width="1" /> Elevating Oxygen Chemical & Engineering News Oxygen is the ugly duckling of biomolecular nuclear magnetic resonance. Although it is a key atom in proteins and nucleic acids, its siblings carbon, ... Elevating Oxygen - Chemical & Engineering News More...	nmrlearner	Online News	0	01-03-2011 10:48 PM
[NMR tweet] @xtaldave the mass spec elves...? Thought that was goblins. Or are they on nuclear ma @xtaldave the mass spec elves...? Thought that was goblins. Or are they on nuclear magnetic resonance these days? Published by jaclong (James) on 2010-11-22T18:05:57Z Source: Twitter	nmrlearner	Twitter NMR	0	11-22-2010 06:13 PM
Biophysical Society names 2011 award recipients - Genetic Engineering News (press rel Biophysical Society names 2011 award recipients - Genetic Engineering News (press release) <img alt="" height="1" width="1" /> Biophysical Society names 2011 award recipients Genetic Engineering News (press release) ... membrane protein biochemistry. Eric Oldfield, University of Illinois, will be awarded the Avanti Award in Lipids for his pioneering research using NMR ... and more » Read here	nmrlearner	Online News	0	09-04-2010 06:53 AM
[NMR paper] Catalytic activity of the SH2 domain of human pp60c-src; evidence from NMR, mass spec Catalytic activity of the SH2 domain of human pp60c-src; evidence from NMR, mass spectrometry, site-directed mutagenesis and kinetic studies for an inherent phosphatase activity. Related Articles Catalytic activity of the SH2 domain of human pp60c-src; evidence from NMR, mass spectrometry, site-directed mutagenesis and kinetic studies for an inherent phosphatase activity. Biochemistry. 1995 Nov 21;34(46):15351-8 Authors: Boerner RJ, Consler TG, Gampe RT, Weigl D, Willard DH, Davis DG, Edison AM, Loganzo F, Kassel DB, Xu RX During solution...	nmrlearner	Journal club	0	08-22-2010 03:50 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off