Hydrogen exchange in peptides and proteins using NMR spectroscopy - ScienceDirect.com

		BioNMR > NMR community > Online News
Hydrogen exchange in peptides and proteins using NMR spectroscopy - ScienceDirect.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

04-27-2024, 09:30 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Hydrogen exchange in peptides and proteins using NMR spectroscopy - ScienceDirect.com

Hydrogen exchange in peptides and proteins using NMR spectroscopy - ScienceDirect.com

Hydrogen exchange in peptides and proteins using NMR spectroscopy ScienceDirect.com Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
B2LiVe, a label-free 1D-NMR method to quantify the binding of amphitropic peptides or proteins to membrane vesicles - ScienceDirect B2LiVe, a label-free 1D-NMR method to quantify the binding of amphitropic peptides or proteins to membrane vesicles - ScienceDirect B2LiVe, a label-free 1D-NMR method to quantify the binding of amphitropic peptides or proteins to membrane vesicles ScienceDirect Read here	nmrlearner	Online News	0	12-28-2023 10:50 PM
[NMR paper] [Interactions between proteins and cation exchange adsorbents analyzed by NMR and hydrogen/deuterium exchange technique]. . . Sheng Wu Gong Cheng Xue Bao. 2014 Sep;30(9):1454-63 Authors: Wang K, Hao D, Qi S, Ma G Abstract In silico acquirement of the accurate residue details of protein on chromatographic media is a bottleneck in protein chromatography separation and purification. Here we developed a novel approach by coupling with H/D exchange and nuclear magnetic resonance to observe hen egg white lysozyme (HEWL) unfolding behavior adsorbed on cation exchange media (SP Sepharose FF). Analysis of 1D 1H-NMR shows that protein unfolding accelerated...	nmrlearner	Journal club	0	03-01-2015 12:18 PM
[NMR paper] Use of H/D isotope effects to gather information about hydrogen bonding and hydrogen exchange rates Use of H/D isotope effects to gather information about hydrogen bonding and hydrogen exchange rates Publication date: Available online 11 October 2013 Source:Journal of Magnetic Resonance</br> Author(s): Mitsuhiro Takeda , Yohei Miyanoiri , Tsutomu Terauchi , Chin-Jiun Yang , Masatsune Kainosho</br> Polar side-chains in proteins play important roles in formingand maintaining three-dimensional structures, and thus participate invarious biological functions. Until recently, most protein NMR studieshave focused onthe non-exchangeable protons of amino acid...	nmrlearner	Journal club	0	10-11-2013 10:43 AM
[NMR paper] Fast hydrogen exchange affects (15)N relaxation measurements in intrinsically disordered proteins. Fast hydrogen exchange affects (15)N relaxation measurements in intrinsically disordered proteins. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--production.springer.de-OnlineResources-Logos-springerlink.gif Related Articles Fast hydrogen exchange affects (15)N relaxation measurements in intrinsically disordered proteins. J Biomol NMR. 2013 Jan 12; Authors: Kim S, Wu KP, Baum J Abstract Unprotected amide protons can undergo fast hydrogen exchange (HX) with protons from the solvent. Generally, NMR experiments using the out-and-back...	nmrlearner	Journal club	0	02-03-2013 10:22 AM
[NMR paper] Rapid Characterization of Hydrogen Exchange in Proteins. Rapid Characterization of Hydrogen Exchange in Proteins. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--media.wiley.com-assets-2250-98-WileyOnlineLibrary-Button_120x27px_FullText.gif Related Articles Rapid Characterization of Hydrogen Exchange in Proteins. Angew Chem Int Ed Engl. 2013 Jan 22; Authors: Thakur A, Chandra K, Dubey A, D'Silva P, Atreya HS Abstract Kinetics and thermodynamics of amide hydrogen exchange in proteins can be investigated with two-dimensional (13) CO-(15) N NMR correlation experiments. The spectra are...	nmrlearner	Journal club	0	02-03-2013 10:19 AM
[NMR paper] Hydrogen exchange properties of proteins in native and denatured states monitored by Hydrogen exchange properties of proteins in native and denatured states monitored by mass spectrometry and NMR. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Hydrogen exchange properties of proteins in native and denatured states monitored by mass spectrometry and NMR. Protein Sci. 1997 Jun;6(6):1316-24 Authors: Chung EW,...	nmrlearner	Journal club	0	08-22-2010 03:31 PM
[NMR paper] Hydrogen exchange properties of proteins in native and denatured states monitored by Hydrogen exchange properties of proteins in native and denatured states monitored by mass spectrometry and NMR. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Hydrogen exchange properties of proteins in native and denatured states monitored by mass spectrometry and NMR. Protein Sci. 1997 Jun;6(6):1316-24 Authors: Chung EW,...	nmrlearner	Journal club	0	08-22-2010 03:03 PM
[NMR paper] Rapid amide proton exchange rates in peptides and proteins measured by solvent quench Rapid amide proton exchange rates in peptides and proteins measured by solvent quenching and two-dimensional NMR. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Rapid amide proton exchange rates in peptides and proteins measured by solvent quenching and two-dimensional NMR. Protein Sci. 1995 Apr;4(4):804-14 Authors: Zhang YZ,...	nmrlearner	Journal club	0	08-22-2010 03:41 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off