Hydration studies on the archaeal protein Sso7d using NMR measurements and MD ... - 7thSpace Interactive (press release)

		BioNMR > NMR community > Online News
Hydration studies on the archaeal protein Sso7d using NMR measurements and MD ... - 7thSpace Interactive (press release)

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

10-21-2011, 10:04 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Hydration studies on the archaeal protein Sso7d using NMR measurements and MD ... - 7thSpace Interactive (press release)

Hydration studies on the archaeal protein Sso7d using NMR measurements and MD ... - 7thSpace Interactive (press release)

Hydration studies on the archaeal protein Sso7d using NMR measurements and MD ...
7thSpace Interactive (press release)
... the hydration of the archaeal multifunctional protein Sso7d from Solfolobus solfataricus was investigated using a combination of computational and experimental data derived from molecular dynamics simulations and ePHOGSY NMR spectroscopy. ...

Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Protein structures give disease clues - EurekAlert (press release) <img alt="" height="1" width="1" /> Protein structures give disease clues EurekAlert (press release) Using some of the most powerful nuclear magnetic resonance equipment available, researchers at the University of California, Davis, are making discoveries about the shape and structure of biological molecules -- potentially leading to new ways to treat ... and more » Protein structures give disease clues - EurekAlert (press release) More...	nmrlearner	Online News	0	02-01-2012 09:28 PM
Council of Scientific and Industrial Research Awards - Press Information Bureau (press release) <img alt="" height="1" width="1" /> Council of Scientific and Industrial Research Awards Press Information Bureau (press release) RVHosur of Tata Institute of Fundamental Research , Mumbai , has made outstanding contribution in deciphering protein structure and dynamics using Nuclear Magnetic Resonance (NMR) spectroscopy. His research over the last decade pertains to ... and more » Council of Scientific and Industrial Research Awards - Press Information Bureau (press release) More...	nmrlearner	Online News	0	09-26-2011 06:54 PM
DARS-RNP and QUASI-RNP: New statistical potentials for protein-RNA docking - 7thSpace Interactive (press release) DARS-RNP and QUASI-RNP: New statistical potentials for protein-RNA docking - 7thSpace Interactive (press release) <img alt="" height="1" width="1" /> DARS-RNP and QUASI-RNP: New statistical potentials for protein-RNA docking 7thSpace Interactive (press release) Unfortunately, the experimental determination of protein-RNA complexes is tedious and difficult, both by X-ray crystallography and NMR. For many interacting proteins and RNAs the individual structures are available, enabling computational prediction of ... Read here	nmrlearner	Online News	0	08-19-2011 04:02 AM
Effect of ischemic preconditioning in skeletal muscle measured by functional ... - 7thSpace Interactive (press release) <img alt="" height="1" width="1" /> Effect of ischemic preconditioning in skeletal muscle measured by functional ... 7thSpace Interactive (press release) Nuclear magnetic resonance (NMR) imaging and spectroscopy have been applied to assess skeletal muscle oxidative metabolism. Therefore, in-vivo NMR may enable the characterization of ischemia-reperfusion injury. The goal of this study was to evaluate ... Protein NMR Spectroscopy: Practical Techniques and ApplicationsspectroscopyNOW.com all 2 news articles » Effect of ischemic preconditioning in skeletal muscle measured by...	nmrlearner	Online News	0	07-26-2011 11:22 PM
Objective identification of residue ranges for the superposition of protein ... - 7thSpace Interactive (press release) Objective identification of residue ranges for the superposition of protein ... - 7thSpace Interactive (press release) <img alt="" height="1" width="1" /> Objective identification of residue ranges for the superposition of protein ... 7thSpace Interactive (press release) Results: We present an automated and objective method for finding amino acid residue ranges for the superposition and analysis of protein structures, in particular for structure bundles resulting from NMR structure calculations. ... Read here	nmrlearner	Online News	0	05-18-2011 08:51 PM
Exploring NMR ensembles of calcium binding proteins: perspectives to design ... - 7thSpace Interactive (press release) Exploring NMR ensembles of calcium binding proteins: perspectives to design ... - 7thSpace Interactive (press release) <img alt="" height="1" width="1" /> Exploring NMR ensembles of calcium binding proteins: perspectives to design ... 7thSpace Interactive (press release) We employed several scoring methods in order to find the best protein conformations. Our results show that docking on NMR structures of calmodulin and centrin can be very helpful to take into account conformational changes occurring at protein-protein ... Read here	nmrlearner	Online News	0	05-13-2011 07:41 AM
Searching the protein structure database for ligand-binding site similarities ... - 7thSpace Interactive (press release) Searching the protein structure database for ligand-binding site similarities ... - 7thSpace Interactive (press release) <img alt="" height="1" width="1" /> Searching the protein structure database for ligand-binding site similarities ... 7thSpace Interactive (press release) CPASS is an important component of our Functional Annotation Screening Technology by NMR (FAST-NMR) protocol and has been successfully applied to aid the ... Read here	nmrlearner	Online News	0	01-27-2011 04:31 AM
Protein NMR/Biophysics Research Associate (BS/MS) - HTScreening (press release) Protein NMR/Biophysics Research Associate (BS/MS) - HTScreening (press release) <img alt="" height="1" width="1" /> Protein NMR/Biophysics Research Associate (BS/MS) HTScreening (press release) The candidate will join a state-of-the art protein structure unit at the NIBR Cambridge campus as part of the protein NMR team. ... Read here	nmrlearner	Online News	0	08-25-2010 03:51 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off