How Proteins Shape-Shift By the Hour is Central to Figuring Out How Circadian Clocks Work - Technology Networks

		BioNMR > NMR community > Online News
How Proteins Shape-Shift By the Hour is Central to Figuring Out How Circadian Clocks Work - Technology Networks

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

02-20-2018, 10:04 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,734

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

How Proteins Shape-Shift By the Hour is Central to Figuring Out How Circadian Clocks Work - Technology Networks

How Proteins Shape-Shift By the Hour is Central to Figuring Out How Circadian Clocks Work - Technology Networks

Technology Networks

How Proteins Shape-Shift By the Hour is Central to Figuring Out How Circadian Clocks Work
Technology Networks
Cyanobacterial circadian clock proteins are unique because they can be reconstituted within a test tube in the absence of live cells. Researchers made a solution of these proteins and adenosine triphosphate (ATP), food for the proteins, to create a ...

and more »
Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Researchers discovered that how proteins wiggle, jiggle, and shape-shift by the hour is central to figuring out how ... - Science Daily Researchers discovered that how proteins wiggle, jiggle, and shape-shift by the hour is central to figuring out how ... - Science Daily <img alt="" height="1" width="1"> Researchers discovered that how proteins wiggle, jiggle, and shape-shift by the hour is central to figuring out how ... Science Daily Researchers made a solution of these proteins and adenosine triphosphate (ATP), food for the proteins, to create a circadian clock that functioned for weeks. LiWang's structural biology lab uses nuclear magnetic resonance (NMR) spectroscopy, the parent ... and more » Read here	nmrlearner	Online News	0	02-19-2018 08:25 AM
Droplets of ALS Protein Measured at Atomic Level - Technology Networks Droplets of ALS Protein Measured at Atomic Level - Technology Networks http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcTUIBVKntE1kFXHE3bRP_1eiViHKCjYC0RxNQob95fWg__jk8-ayuyq7aEpa6aBTS5CvgnpsvKi Technology Networks <img alt="" height="1" width="1"> Droplets of ALS Protein Measured at Atomic Level Technology Networks The protein collects in membrane-less organelles, where it may use its low-complexity domain to stick together, much in the way that water collects into droplets on the outside of a cold soda bottle on a humid summer day. Until the publication of this ......	nmrlearner	Online News	0	01-22-2018 01:16 PM
Nanodiscs Catch Misfolding Proteins Red-Handed - Technology Networks Nanodiscs Catch Misfolding Proteins Red-Handed - Technology Networks http://www.bionmr.com//t3.gstatic.com/images?q=tbn:ANd9GcScWpdV-gHAfEjdMI-LiyZipSop68WU9wlp5attTRArr7b1bu1ub4OwSDRg36Adt1VfcnTkkRf6 Technology Networks <img alt="" height="1" width="1"> Nanodiscs Catch Misfolding Proteins Red-Handed Technology Networks "We're able to stop the aggregation of the protein in this restricted membrane environment so we can monitor what it looks like before it becomes a mass of fibers." At this point, the researchers use a technique called nuclear magnetic resonance ...	nmrlearner	Online News	0	12-18-2017 11:19 PM
Researchers Put the Brakes on HIV's Ability to Infect - Technology Networks <img alt="" height="1" width="1"> Researchers Put the Brakes on HIV's Ability to Infect Technology Networks She is an expert in nuclear magnetic resonance (NMR) spectroscopy, which helps scientists identify and pinpoint the location of every atom in a structure and how each atom moves. â??Viruses like HIV and their constituent protein and nucleic acid ... Researchers Put the Brakes on HIV's Ability to Infect - Technology Networks More...	nmrlearner	Online News	0	12-04-2017 03:35 PM
Protein motion questions unravelled. - Technology Networks (blog) http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcQvMIzzqdPI4exiUT4_6rC8MimBHNz4EacVKRw__4dZxiahWmpNauW9gRZNDqGpKBFPylHv8p9d Technology Networks (blog) <img alt="" height="1" width="1"> Protein motion questions unravelled. Technology Networks (blog) The researchers took starting structural information based on nuclear magnetic resonance or X-ray techniques, and simulated 14 behavioural dynamics in 12 proteins in times ranging from 50 nanoseconds to 1.23 milliseconds. In short, the researchers ... Protein motion questions unravelled. - Technology Networks (blog)	nmrlearner	Online News	0	10-17-2017 10:19 AM
Protein Motion Questions Unravelled - Technology Networks http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcQvMIzzqdPI4exiUT4_6rC8MimBHNz4EacVKRw__4dZxiahWmpNauW9gRZNDqGpKBFPylHv8p9d Technology Networks <img alt="" height="1" width="1"> Protein Motion Questions Unravelled Technology Networks The researchers took starting structural information based on nuclear magnetic resonance or X-ray techniques, and simulated 14 behavioural dynamics in 12 proteins in times ranging from 50 nanoseconds to 1.23 milliseconds. In short, the researchers ... and more » Protein Motion Questions Unravelled - Technology Networks	nmrlearner	Online News	0	10-16-2017 03:30 PM
New Approach for Membrane Protein Crystallization - Technology Networks New Approach for Membrane Protein Crystallization - Technology Networks <img alt="" height="1" width="1"> New Approach for Membrane Protein Crystallization Technology Networks Nanodiscs are also widely used to study the structure of membrane proteins using nuclear magnetic resonance (NMR), cryo-electron microscopy, atomic force microscopy, and other methods. Direct use of membrane proteins embedded in nanodiscs for ... and more » Read here	nmrlearner	Online News	0	03-09-2017 12:11 AM
New Approach for Membrane Protein Crystallization - Technology Networks New Approach for Membrane Protein Crystallization - Technology Networks http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcT1Pp1RgJH1mxXIiB6CmuefrjAbBMWc0EDqEWcVpQG2yJnzzwgSg73-a9FdZ9qSeiwEiGCyiFm6 Technology Networks <img alt="" height="1" width="1"> New Approach for Membrane Protein Crystallization Technology Networks Nanodiscs are also widely used to study the structure of membrane proteins using nuclear magnetic resonance (NMR), cryo-electron microscopy, atomic force microscopy, and other methods. Direct use of membrane proteins embedded in nanodiscs for ...	nmrlearner	Online News	0	03-08-2017 09:02 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off