How pairs of proteins collaborate to splice RNAs into cell-specific products - Medical Xpress

		BioNMR > NMR community > Online News
How pairs of proteins collaborate to splice RNAs into cell-specific products - Medical Xpress

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

10-17-2014, 04:48 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

How pairs of proteins collaborate to splice RNAs into cell-specific products - Medical Xpress

How pairs of proteins collaborate to splice RNAs into cell-specific products - Medical Xpress

Medical Xpress

How pairs of proteins collaborate to splice RNAs into cell-specific products
Medical Xpress
Detailed structural analysis using nuclear magnetic resonance (NMR) techniques revealed that ASD-1 RRM binding initiates a rearrangement in the RNA that favors SUP-12 RRM binding, resulting in a distinctive complex in which a single guanine nucleotide ...

Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Protein's structural shift offers clues to tumor suppression and other key ... - Medical Xpress Protein's structural shift offers clues to tumor suppression and other key ... - Medical Xpress <img alt="" height="1" width="1" /> Protein's structural shift offers clues to tumor suppression and other key ... Medical Xpress Using nuclear magnetic resonance (NMR) and other techniques, researchers identified a regulatory mechanism that prompted the NPM1 segment to partially or completely unfold into a single disordered strand of amino acids. The researchers believe that the ... Read here	nmrlearner	Online News	0	07-04-2014 08:28 PM
Sex hormone levels at midlife linked to heart disease risk in women - Medical Xpress http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcRUDeMZIlFDDeEiaumKKf6zLdOwHQWqp_iwIiRsupZbiWE9o-dzT__1kfd5JmwWsQ0zdgzkIqg Medical Xpress <img alt="" height="1" width="1" /> Sex hormone levels at midlife linked to heart disease risk in women Medical Xpress Dr. El Khoudary and her colleagues used nuclear magnetic resonance spectroscopy to measure the size, distribution and concentration of lipoproteins that carry cholesterol in the blood. The Pitt Public Health team found that as estrogen levels fall ... Sex hormone levels at midlife linked to heart disease risk in women -...	nmrlearner	Online News	0	06-29-2014 02:00 AM
The antioxidant role of proteins containing selenium - Medical Xpress http://www.bionmr.com//t3.gstatic.com/images?q=tbn:ANd9GcSFmjKJueH8sAToPwf6NTRqSMgpmXF5eN5IlNWIrF-aWjIE0gtwFZ4ekXGsw23ht2fak3YoJkNr Medical Xpress <img alt="" height="1" width="1" /> The antioxidant role of proteins containing selenium Medical Xpress Rozovsky and her team used mass spectrometry and nuclear magnetic resonance spectroscopy to study selenium in redox biology, which the journal called a new approach that deepens scientific understanding of the chemical properties involved. Rozovsky ... The antioxidant role of proteins containing selenium - Medical Xpress	nmrlearner	Online News	0	04-28-2014 10:34 PM
Researchers identify new protein markers that may improve understanding of ... - Medical Xpress Researchers identify new protein markers that may improve understanding of ... - Medical Xpress <img alt="" height="1" width="1" /> Researchers identify new protein markers that may improve understanding of ... Medical Xpress Testing for GlycA and GlycB by NMR spectroscopy uses signals that arise from the binding of glucose molecules to a variety of circulating inflammatory proteins, especially fibrinogen, α1-antichymotrypsin, haptoglobin-1, α1-antitrypsin, complement C3 ... and more » Read here	nmrlearner	Online News	0	03-30-2014 06:49 PM
[NMR paper] Preparation of Multiple Site-Specific Mutant Proteins for NMR Studies by PCR-Directed Cell-Free Protein Synthesis. Preparation of Multiple Site-Specific Mutant Proteins for NMR Studies by PCR-Directed Cell-Free Protein Synthesis. Preparation of Multiple Site-Specific Mutant Proteins for NMR Studies by PCR-Directed Cell-Free Protein Synthesis. Methods Mol Biol. 2014;1118:169-87 Authors: Ozawa K, Qi R Abstract Cell-free protein synthesis (CFPS) offers a fast and inexpensive approach to selectively label proteins with isotopes that can then be detected by nuclear magnetic resonance (NMR) spectroscopy directly in the translation mixture. We describe...	nmrlearner	Journal club	0	01-08-2014 11:23 AM
Cell membrane protein discovery uses NMR spectroscopy - Laboratory Products News Cell membrane protein discovery uses NMR spectroscopy - Laboratory Products News <img alt="" height="1" width="1" /> Cell membrane protein discovery uses NMR spectroscopy Laboratory Products News Guelph, ON - University of Guelph physics professors Vladimir Ladizhansky and Leonid Brown say they have perfected ways to determine the structure of large proteins found in cell membranes throughout the body. Their work may help drug companies and ... and more » Read here	nmrlearner	Online News	0	09-10-2013 08:00 AM
Patients benefit from primary care wellness program - Medical Xpress <img alt="" height="1" width="1" /> Patients benefit from primary care wellness program Medical Xpress Blood pressure, body mass index, fasting blood glucose and insulin levels, nuclear magnetic resonance lipoprotein profiles, fitness, dietary intake, physical activity, and emotional well-being were assessed at baseline and at four and 10 months. Patients benefit from primary care wellness program - Medical Xpress More...	nmrlearner	Online News	0	07-12-2013 06:01 PM
Cervical cancer: First 3-D image of an HPV oncoprotein - Medical Xpress Cervical cancer: First 3-D image of an HPV oncoprotein - Medical Xpress <img alt="" height="1" width="1" /> Cervical cancer: First 3-D image of an HPV oncoprotein Medical Xpress Success depended on two factors: the development of methods for isolating protein E6 as well as the use of nuclear magnetic resonance (NMR) and crystallography techniques. Having dealt with various aggregation and purification problems, the researchers ... and more » Read here	nmrlearner	Online News	0	02-15-2013 05:21 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off