How to determine a protein's shape - The Economist

		BioNMR > NMR community > Online News
How to determine a protein's shape - The Economist

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

02-10-2017, 03:19 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

How to determine a protein's shape - The Economist

How to determine a protein's shape - The Economist

The Economist

How to determine a protein's shape
The Economist
ABOUT 120,000 types of protein molecule have yielded up their structures to science. That sounds a lot, but it isn't. The techniques, such as X-ray crystallography and nuclear-magnetic resonance (NMR), which are used to elucidate such structures do not ...

Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Detection of RNA–Protein Interactions in Living Cells with SHAPE Detection of RNA–Protein Interactions in Living Cells with SHAPE http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.5b00977/20151111/images/medium/bi-2015-00977x_0007.gif Biochemistry DOI: 10.1021/acs.biochem.5b00977 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/WwxMghExNKY More...	nmrlearner	Journal club	0	11-12-2015 09:05 AM
Measuring Protein Shape and Topology using Mass Spectrometry - SelectScience.net (press release) (registration) Measuring Protein Shape and Topology using Mass Spectrometry - SelectScience.net (press release) (registration) http://www.bionmr.com//t1.gstatic.com/images?q=tbn:ANd9GcTJN0FvanzEPGxegxaSHrwAQdV_tG65PXhoxR-R9YKr6b3-ebGvI_37E_D7cv_l8KT7P3z5Egk SelectScience.net (press release) (registration) <img alt="" height="1" width="1"> Measuring Protein Shape and Topology using Mass Spectrometry SelectScience.net (press release) (registration) NMR, x-ray and other technologies in her center can analyze some proteins and protein complexes, but are limited if the protein is in a messy mixture....	nmrlearner	Online News	0	08-12-2015 10:04 PM
[NMR paper] NMRDSP: An Accurate Prediction of Protein Shape Strings from NMR Chemical Shifts and Sequence Data. NMRDSP: An Accurate Prediction of Protein Shape Strings from NMR Chemical Shifts and Sequence Data. Related Articles NMRDSP: An Accurate Prediction of Protein Shape Strings from NMR Chemical Shifts and Sequence Data. PLoS One. 2013;8(12):e83532 Authors: Mao W, Cong P, Wang Z, Lu L, Zhu Z, Li T Abstract Shape string is structural sequence and is an extremely important structure representation of protein backbone conformations. Nuclear magnetic resonance chemical shifts give a strong correlation with the local protein structure, and are...	nmrlearner	Journal club	0	01-01-2014 03:05 PM
A Potentially Life-Saving Protein Takes Shape - Science Daily (press release) A Potentially Life-Saving Protein Takes Shape - Science Daily (press release) <img alt="" height="1" width="1" /> A Potentially Life-Saving Protein Takes Shape Science Daily (press release) July 2, 2013 â?? A tiny protein called ubiquitin -- so named because it is present in every cell of living things as dissimilar as hollyhocks and humans -- may hold the key to treatment for a variety of diseases from Parkinson's to diabetes. The protein ... Read here	nmrlearner	Online News	0	07-10-2013 04:12 AM
A Potentially Life - Saving Protein Takes Shape - Science Daily (press release) A Potentially Life - Saving Protein Takes Shape - Science Daily (press release) <img alt="" height="1" width="1" /> A Potentially Life - Saving Protein Takes Shape Science Daily (press release) July 2, 2013 â?? A tiny protein called ubiquitin -- so named because it is present in every cell of living things as dissimilar as hollyhocks and humans -- may hold the key to treatment for a variety of diseases from Parkinson's to diabetes. The protein ... and more » Read here	nmrlearner	Online News	0	07-02-2013 10:20 PM
Potentially life-saving protein takes shape: Ubiquitin's novel forms suggest ... - Phys.Org Potentially life-saving protein takes shape: Ubiquitin's novel forms suggest ... - Phys.Org <img alt="" height="1" width="1" /> Potentially life-saving protein takes shape: Ubiquitin's novel forms suggest ... Phys.Org ... protein takes shape: Ubiquitin's novel forms suggest novel functions. 46 minutes ago. A tiny protein called ubiquitin â?? so named because it is present in every cell of living things as dissimilar as hollyhocks and humans - may hold the key to ... Read here	nmrlearner	Online News	0	07-02-2013 10:20 PM
Small Angle X-Ray Scattering and the Determination of Protein Shape - Azom.com Small Angle X-Ray Scattering and the Determination of Protein Shape - Azom.com http://www.bionmr.com//nt1.ggpht.com/news/tbn/iU2tlbV3PRWsOM/6.jpg Azom.com <img alt="" height="1" width="1" /> Small Angle X-Ray Scattering and the Determination of Protein Shape Azom.com The low resolution 3D structure obtained by ab-initio methods is an important additional data to the high resolution structures obtained by protein crystallography and NMR. This article discusses the application of SAXSess mc system from Anton Paar to ... and more »	nmrlearner	Online News	0	02-20-2013 06:24 PM
[NMR paper] Shape and dynamics of a calcium-binding protein investigated by nitrogen-15 NMR relax Shape and dynamics of a calcium-binding protein investigated by nitrogen-15 NMR relaxation. Related Articles Shape and dynamics of a calcium-binding protein investigated by nitrogen-15 NMR relaxation. Methods Mol Biol. 2002;173:285-300 Authors: Werner JM, Campbell ID, Downing AK	nmrlearner	Journal club	0	11-24-2010 08:49 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off