Targeting the initiation and termination codons of SARS-CoV-2 spike protein as possible therapy against COVID-19: the role of novel harpagide 5-O-beta-D-glucopyranoside from Clerodendrum volubile P Beauv. (Labiatae) - DocWire News

		BioNMR > NMR community > Online News
Targeting the initiation and termination codons of SARS-CoV-2 spike protein as possible therapy against COVID-19: the role of novel harpagide 5-O-beta-D-glucopyranoside from Clerodendrum volubile P Beauv. (Labiatae) - DocWire News

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

11-04-2020, 05:04 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,922

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Targeting the initiation and termination codons of SARS-CoV-2 spike protein as possible therapy against COVID-19: the role of novel harpagide 5-O-beta-D-glucopyranoside from Clerodendrum volubile P Beauv. (Labiatae) - DocWire News

Targeting the initiation and termination codons of SARS-CoV-2 spike protein as possible therapy against COVID-19: the role of novel harpagide 5-O-beta-D-glucopyranoside from Clerodendrum volubile P Beauv. (Labiatae) DocWire News Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Scientists refine SARS-CoV-2 protein structures - News-Medical.Net Scientists refine SARS-CoV-2 protein structures News-Medical.Net Scientists refine SARS-CoV-2 protein structures - News-Medical.Net More...	nmrlearner	Online News	0	10-09-2020 08:31 PM
Structural characterization of the N-linked glycans in the receptor binding domain of the SARS-CoV-2 spike protein and their interactions with human lectins using NMR spectroscopy - Wiley Structural characterization of the N-linked glycans in the receptor binding domain of the SARS-CoV-2 spike protein and their interactions with human lectins using NMR spectroscopy - Wiley Structural characterization of the N-linked glycans in the receptor binding domain of the SARS-CoV-2 spike protein and their interactions with human lectins using NMR spectroscopy Wiley Read here	nmrlearner	Online News	0	09-26-2020 07:23 AM
Structural characterization of the N-linked glycans in the receptor binding domain of the SARS-CoV-2 spike protein and their interactions with human lectins using NMR spectroscopy - Wiley Structural characterization of the N-linked glycans in the receptor binding domain of the SARS-CoV-2 spike protein and their interactions with human lectins using NMR spectroscopy - Wiley Structural characterization of the N-linked glycans in the receptor binding domain of the SARS-CoV-2 spike protein and their interactions with human lectins using NMR spectroscopy Wiley Read here	nmrlearner	Online News	0	09-13-2020 09:18 AM
[NMR paper] Structural characterization of the N-linked glycans in the receptor binding domain of the SARS-CoV-2 spike protein andtheir interactions with human lectins using NMR spectroscopy. Structural characterization of the N-linked glycans in the receptor binding domain of the SARS-CoV-2 spike protein andtheir interactions with human lectins using NMR spectroscopy. Structural characterization of the N-linked glycans in the receptor binding domain of the SARS-CoV-2 spike protein and*their interactions with human lectins using NMR spectroscopy. Angew Chem Int Ed Engl. 2020 Sep 11;: Authors: Lenza MP, Oyenarte I, Diercks T, Quintana JI, Gimeno A, Bosch A, Coelho H, Diniz A, Peccati F, Delgado S, Valle M, Millet O, Abrescia NGA,...	nmrlearner	Journal club	0	09-13-2020 09:18 AM
[NMR paper] Structural characterization of the N-linked glycans in the receptor binding domain of the SARS-CoV-2 spike protein andtheir interactions with human lectins using NMR spectroscopy Structural characterization of the N-linked glycans in the receptor binding domain of the SARS-CoV-2 spike protein andtheir interactions with human lectins using NMR spectroscopy Angewandte Chemie International Edition, Accepted Article. More...	nmrlearner	Journal club	0	09-13-2020 09:18 AM
(1)H, (13)C, and (15)N backbone chemical shift assignments of the nucleic acid-binding domain of SARS-CoV-2 non-structural protein 3e - DocWire News (1)H, (13)C, and (15)N backbone chemical shift assignments of the nucleic acid-binding domain of SARS-CoV-2 non-structural protein 3e - DocWire News (1)H, (13)C, and (15)N backbone chemical shift assignments of the nucleic acid-binding domain of SARS-CoV-2 non-structural protein 3e DocWire News Read here	nmrlearner	Online News	0	08-09-2020 10:30 PM
A Race to Solve the COVID Protein Puzzle - Yale News A Race to Solve the COVID Protein Puzzle Yale News A Race to Solve the COVID Protein Puzzle - Yale News More...	nmrlearner	Online News	0	07-01-2020 05:42 AM
Aalto Bio Reagents launches first recombinant SARS-CoV-2 (COVID-19) nucleocapsid protein for diagnostic testing - SelectScience Aalto Bio Reagents launches first recombinant SARS-CoV-2 (COVID-19) nucleocapsid protein for diagnostic testing - SelectScience Aalto Bio Reagents launches first recombinant SARS-CoV-2 (COVID-19) nucleocapsid protein for diagnostic testing SelectScience Read here	nmrlearner	Online News	0	03-29-2020 12:14 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off