Exploration of novel ??-protein folds through de novo design - Nature.com

		BioNMR > NMR community > Online News
Exploration of novel ??-protein folds through de novo design - Nature.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

Today, 05:00 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,719

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Exploration of novel ??-protein folds through de novo design - Nature.com

Exploration of novel ??-protein folds through de novo design - Nature.com

Exploration of novel ??-protein folds through de novo design Nature.com Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Exploration of novel ??-protein folds through de novo design - Nature.com Exploration of novel ??-protein folds through de novo design - Nature.com Exploration of novel ??-protein folds through de novo design Nature.com Read here	nmrlearner	Online News	0	12-28-2023 10:50 PM
[ASAP] Efficient Exploration of Sequence Space by Sequence-Guided Protein Engineering and Design Efficient Exploration of Sequence Space by Sequence-Guided Protein Engineering and Design https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.1c00757/20220304/images/medium/bi1c00757_0005.gif Biochemistry DOI: 10.1021/acs.biochem.1c00757 More...	nmrlearner	Journal club	0	03-05-2022 01:44 AM
Expanding the space of protein geometries by computational design of de novo fold families - Science Magazine Expanding the space of protein geometries by computational design of de novo fold families - Science Magazine Expanding the space of protein geometries by computational design of de novo fold families Science Magazine Read here	nmrlearner	Online News	0	08-27-2020 07:27 PM
De novo protein design enables the precise induction of RSV-neutralizing antibodies - Science Magazine De novo protein design enables the precise induction of RSV-neutralizing antibodies Science Magazine De novo protein design enables the precise induction of RSV-neutralizing antibodies - Science Magazine More...	nmrlearner	Online News	0	05-15-2020 08:51 AM
De novo protein design enables the precise induction of RSV-neutralizing antibodies - Science Magazine De novo protein design enables the precise induction of RSV-neutralizing antibodies - Science Magazine De novo protein design enables the precise induction of RSV-neutralizing antibodies Science Magazine Read here	nmrlearner	Online News	0	05-15-2020 08:51 AM
De novo design of protein logic gates - Science Magazine De novo design of protein logic gates - Science Magazine De novo design of protein logic gates Science Magazine Read here	nmrlearner	Online News	0	05-04-2020 10:08 AM
De novo protein structure determination from near-atomic-resolution cryo-EM maps - Nature.com De novo protein structure determination from near-atomic-resolution cryo-EM maps - Nature.com <img alt="" height="1" width="1"> De novo protein structure determination from near-atomic-resolution cryo-EM maps Nature.com Despite these developments, little progress has been made in de novo model building into near-atomic-resolution cryo-EM density maps. Structural interpretation of cryo-EM maps typically starts with fitting an atomic X-ray or NMR structure into the map5. Read here	nmrlearner	Online News	0	02-24-2015 02:48 PM
[NMR paper] De novo folding of membrane proteins: an exploration of the structure and NMR propert De novo folding of membrane proteins: an exploration of the structure and NMR properties of the fd coat protein. Related Articles De novo folding of membrane proteins: an exploration of the structure and NMR properties of the fd coat protein. J Mol Biol. 2004 Mar 26;337(3):513-9 Authors: Im W, Brooks CL De novo folding simulations of the major pVIII coat protein from filamentous fd bacteriophage, using a newly developed implicit membrane generalized Born model and replica-exchange molecular dynamics, are presented and discussed. The quality of...	nmrlearner	Journal club	0	11-24-2010 09:25 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off