Evolutionary insights into shape-shifting proteins - Physics Today

		BioNMR > NMR community > Online News
Evolutionary insights into shape-shifting proteins - Physics Today

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

01-28-2021, 02:26 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Evolutionary insights into shape-shifting proteins - Physics Today

Evolutionary insights into shape-shifting proteins - Physics Today

Evolutionary insights into shape-shifting proteins Physics Today Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Time-resolved NMR probes the dynamics of protein folding - Physics Today Time-resolved NMR probes the dynamics of protein folding - Physics Today Time-resolved NMR probes the dynamics of protein folding Physics Today Read here	nmrlearner	Online News	0	04-20-2020 05:10 PM
Time-resolved NMR probes the dynamics of protein folding - Physics Today Time-resolved NMR probes the dynamics of protein folding - Physics Today Time-resolved NMR probes the dynamics of protein folding Physics Today Read here	nmrlearner	Online News	0	03-07-2020 06:20 PM
Time-resolved NMR probes the dynamics of protein folding - Physics Today Time-resolved NMR probes the dynamics of protein folding - Physics Today Time-resolved NMR probes the dynamics of protein folding Physics Today Read here	nmrlearner	Online News	0	02-29-2020 09:52 PM
Modified deep-learning algorithms unveil features of shape-shifting proteins - Phys.org Modified deep-learning algorithms unveil features of shape-shifting proteins - Phys.org Modified deep-learning algorithms unveil features of shape-shifting proteins Phys.orgUsing artificial neural networks designed to emulate the inner workings of the human brain, deep-learning algorithms deftly peruse and analyze large quantities ... Read here	nmrlearner	Online News	0	05-09-2019 11:40 PM
Canada's top science prize won by researcher who spies on shape-shifting proteins - CBC.ca http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcToAiv9gI7FyEsFUnnAfJKoWDzxoI2fmwKUS4uLvHLeAIpo53ThIyTRFui_jfLyBEiKxgZvaIT0 CBC.ca <img alt="" height="1" width="1"> Canada's top science prize won by researcher who spies on shape-shifting proteins CBC.ca Lewis Kay, a Toronto researcher who developed a technique to watch microscopic proteins reposition themselves and change their shapes within cells, has won the $1 million Herzberg Gold Medal, Canada's top science prize. Kay, a professor of biochemistry ... U of T researchers win prestigious NSERC awardsNews@UofT University of...	nmrlearner	Online News	0	05-01-2018 10:57 PM
When Heterotrimeric G Proteins Are Not Activated by G Protein-Coupled Receptors: Structural Insights and Evolutionary Conservation When Heterotrimeric G Proteins Are Not Activated by G Protein-Coupled Receptors: Structural Insights and Evolutionary Conservation http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00845/20171016/images/medium/bi-2017-00845a_0003.gif Biochemistry DOI: 10.1021/acs.biochem.7b00845 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/4Eup-rPKLl8 More...	nmrlearner	Journal club	0	10-17-2017 10:19 AM
NMR protein structures: No deuteration required - Physics Today NMR protein structures: No deuteration required - Physics Today <img alt="" height="1" width="1"> NMR protein structures: No deuteration required Physics Today Unlike x-ray crystallography, it doesn't require a crystalline sample, and it's well suited to the small and medium-sized membrane proteins currently beyond the reach of cryoelectron microscopy. Even with magic-angle spinning, 1H NMR protein spectra ... Read here	nmrlearner	Online News	0	08-19-2016 04:05 AM
[NMR paper] Correlation between local structural dynamics of proteins inferred from NMR ensembles and evolutionary dynamics of homologues of known structure. Correlation between local structural dynamics of proteins inferred from NMR ensembles and evolutionary dynamics of homologues of known structure. Related Articles Correlation between local structural dynamics of proteins inferred from NMR ensembles and evolutionary dynamics of homologues of known structure. J Biomol Struct Dyn. 2013 Jun 3; Authors: Mahajan S, de Brevern AG, Offmann B, Srinivasan N Abstract Conformational changes in proteins are extremely important for their biochemical functions. Correlation between inherent conformational...	nmrlearner	Journal club	0	06-05-2013 06:53 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off