Dynamically committed, uncommitted, and quenched states encoded in protein kinase A revealed by NMR spectroscopy - pnas.org

		BioNMR > NMR community > Online News
Dynamically committed, uncommitted, and quenched states encoded in protein kinase A revealed by NMR spectroscopy - pnas.org

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

06-17-2024, 05:10 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,611

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Dynamically committed, uncommitted, and quenched states encoded in protein kinase A revealed by NMR spectroscopy - pnas.org

Dynamically committed, uncommitted, and quenched states encoded in protein kinase A revealed by NMR spectroscopy - pnas.org

Dynamically committed, uncommitted, and quenched states encoded in protein kinase A revealed by NMR spectroscopy pnas.org Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Raf Kinase Inhibitory Protein regulates the cAMP-dependent protein kinase signaling pathway through a positive feedback loop \| Proceedings of the National Academy of Sciences - pnas.org Raf Kinase Inhibitory Protein regulates the cAMP-dependent protein kinase signaling pathway through a positive feedback loop \| Proceedings of the National Academy of Sciences - pnas.org Raf Kinase Inhibitory Protein regulates the cAMP-dependent protein kinase signaling pathway through a positive feedback loop \| Proceedings of the National Academy of Sciences pnas.org Read here	nmrlearner	Online News	0	10-21-2022 07:28 PM
Vibrational couplings between protein and cofactor in bacterial phytochrome Agp1 revealed by 2D-IR spectroscopy \| Proceedings of the National Academy of Sciences - pnas.org Vibrational couplings between protein and cofactor in bacterial phytochrome Agp1 revealed by 2D-IR spectroscopy \| Proceedings of the National Academy of Sciences - pnas.org Vibrational couplings between protein and cofactor in bacterial phytochrome Agp1 revealed by 2D-IR spectroscopy \| Proceedings of the National Academy of Sciences pnas.org Read here	nmrlearner	Online News	0	08-04-2022 01:03 AM
Raf Kinase Inhibitory Protein regulates the cAMP-dependent protein kinase signaling pathway through a positive feedback loop \| Proceedings of the National Academy of Sciences - pnas.org Raf Kinase Inhibitory Protein regulates the cAMP-dependent protein kinase signaling pathway through a positive feedback loop \| Proceedings of the National Academy of Sciences - pnas.org Raf Kinase Inhibitory Protein regulates the cAMP-dependent protein kinase signaling pathway through a positive feedback loop \| Proceedings of the National Academy of Sciences pnas.org Read here	nmrlearner	Online News	0	06-14-2022 04:36 AM
[NMR paper] Signaling states of a short blue light photoreceptor protein PpSB1-LOV revealed from crystal structures and solution NMR spectroscopy. Signaling states of a short blue light photoreceptor protein PpSB1-LOV revealed from crystal structures and solution NMR spectroscopy. Related Articles Signaling states of a short blue light photoreceptor protein PpSB1-LOV revealed from crystal structures and solution NMR spectroscopy. J Mol Biol. 2016 Jun 9; Authors: Röllen K, Granzin J, Panwalkar V, Arinkin V, Rani R, Hartmann R, Krauss U, Jaeger KE, Willbold D, Batra-Safferling R Abstract LOV (Light-Oxygen-Voltage) domains represent the photo-responsive domains of various...	nmrlearner	Journal club	0	06-14-2016 08:23 PM
Signaling states of a short blue light photoreceptor protein PpSB1-LOV revealed from crystal structures and solution NMR spectroscopy Signaling states of a short blue light photoreceptor protein PpSB1-LOV revealed from crystal structures and solution NMR spectroscopy Publication date: Available online 9 June 2016 Source:Journal of Molecular Biology</br> Author(s): Katrin Röllen, Joachim Granzin, Vineet Panwalkar, Vladimir Arinkin, Raj Rani, Rudolf Hartmann, Ulrich Krauss, Karl-Erich Jaeger, Dieter Willbold, Renu Batra-Safferling</br> LOV (Light-Oxygen-Voltage) domains represent the photo-responsive domains of various blue-light photoreceptor proteins and are widely distributed...	nmrlearner	Journal club	0	06-09-2016 06:54 AM
[NMR paper] Conformation and Topology of Diacylglycerol Kinase in E.coli Membranes Revealed by Solid-state NMR Spectroscopy. Conformation and Topology of Diacylglycerol Kinase in E.coli Membranes Revealed by Solid-state NMR Spectroscopy. Conformation and Topology of Diacylglycerol Kinase in E.coli Membranes Revealed by Solid-state NMR Spectroscopy. Angew Chem Int Ed Engl. 2014 Apr 2; Authors: Chen Y, Zhang Z, Tang X, Li J, Glaubitz C, Yang J Abstract Solid-state NMR is a powerful tool for studying membrane proteins in a native-like lipid environment. 3D magic angle spinning (MAS) NMR was employed to characterize the structure of E.coli diacylglycerol...	nmrlearner	Journal club	0	04-06-2014 02:01 AM
Dynamically committed, uncommitted, and quenched states encoded in protein kinase A revealed by NMR spectroscopy [Biophysics and Computational Biology] Dynamically committed, uncommitted, and quenched states encoded in protein kinase A revealed by NMR spectroscopy Masterson, L. R., Shi, L., Metcalfe, E., Gao, J., Taylor, S. S., Veglia, G.... Date: 2011-04-26 Protein kinase A (PKA) is a ubiquitous phosphoryl transferase that mediates hundreds of cell signaling events. During turnover, its catalytic subunit (PKA-C) interconverts between three major conformational states (open, intermediate, and closed) that are dynamically and allosterically activated by nucleotide binding. We show that the structural transitions between these...	nmrlearner	Journal club	0	04-27-2011 04:16 AM
Dynamically committed, uncommitted, and quenched states encoded in protein kinase A revealed by NMR spectroscopy. Dynamically committed, uncommitted, and quenched states encoded in protein kinase A revealed by NMR spectroscopy. Dynamically committed, uncommitted, and quenched states encoded in protein kinase A revealed by NMR spectroscopy. Proc Natl Acad Sci U S A. 2011 Apr 6; Authors: Masterson LR, Shi L, Metcalfe E, Gao J, Taylor SS, Veglia G Protein kinase A (PKA) is a ubiquitous phosphoryl transferase that mediates hundreds of cell signaling events. During turnover, its catalytic subunit (PKA-C) interconverts between three major conformational states...	nmrlearner	Journal club	0	04-08-2011 10:00 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off