Dynamic Connection between Enzymatic Catalysis and Collective Protein Motions - DocWire News

		BioNMR > NMR community > Online News
Dynamic Connection between Enzymatic Catalysis and Collective Protein Motions - DocWire News

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

07-13-2021, 05:51 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Dynamic Connection between Enzymatic Catalysis and Collective Protein Motions - DocWire News

Dynamic Connection between Enzymatic Catalysis and Collective Protein Motions DocWire News
Dynamic Connection between Enzymatic Catalysis and Collective Protein Motions - DocWire News
More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Methods to study the structure of misfolded protein states in systemic amyloidosis - DocWire News Methods to study the structure of misfolded protein states in systemic amyloidosis DocWire News Methods to study the structure of misfolded protein states in systemic amyloidosis - DocWire News More...	nmrlearner	Online News	0	05-10-2021 04:54 PM
Methods to study the structure of misfolded protein states in systemic amyloidosis - DocWire News Methods to study the structure of misfolded protein states in systemic amyloidosis - DocWire News Methods to study the structure of misfolded protein states in systemic amyloidosis DocWire News Read here	nmrlearner	Online News	0	05-04-2021 01:46 PM
(1)H, (13)C, and (15)N backbone chemical-shift assignments of SARS-CoV-2 non-structural protein 1 (leader protein) - DocWire News (1)H, (13)C, and (15)N backbone chemical-shift assignments of SARS-CoV-2 non-structural protein 1 (leader protein) - DocWire News (1)H, (13)C, and (15)N backbone chemical-shift assignments of SARS-CoV-2 non-structural protein 1 (leader protein) DocWire News Read here	nmrlearner	Online News	0	03-31-2021 11:12 AM
(1)H, (13)C, and (15)N backbone chemical-shift assignments of SARS-CoV-2 non-structural protein 1 (leader protein) - DocWire News (1)H, (13)C, and (15)N backbone chemical-shift assignments of SARS-CoV-2 non-structural protein 1 (leader protein) - DocWire News (1)H, (13)C, and (15)N backbone chemical-shift assignments of SARS-CoV-2 non-structural protein 1 (leader protein) DocWire News Read here	nmrlearner	Online News	0	03-27-2021 05:57 PM
[NMR paper] Localized and collective motions in HET-s(218-289) fibrils from combined NMR relaxation and MD simulation. Localized and collective motions in HET-s(218-289) fibrils from combined NMR relaxation and MD simulation. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--media.wiley.com-assets-7315-19-Wiley_FullText_120x30_orange.png Related Articles Localized and collective motions in HET-s(218-289) fibrils from combined NMR relaxation and MD simulation. Angew Chem Int Ed Engl. 2019 May 09;: Authors: Smith AA, Ernst M, Riniker S, Meier BH Abstract Nuclear magnetic resonance (NMR) relaxation data and molecular dynamics...	nmrlearner	Journal club	0	05-11-2019 07:56 PM
Two Dynamical Regimes of the Substrate Radical RearrangementReaction in B12-Dependent Ethanolamine Ammonia-Lyase ResolveContributions of Native Protein Configurations and Collective ConfigurationalFluctuations to Catalysis Two Dynamical Regimes of the Substrate Radical RearrangementReaction in B12-Dependent Ethanolamine Ammonia-Lyase ResolveContributions of Native Protein Configurations and Collective ConfigurationalFluctuations to Catalysis http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00294/20170614/images/medium/bi-2017-00294r_0007.gif Biochemistry DOI: 10.1021/acs.biochem.7b00294 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/3ffrdx0Ly_I More...	nmrlearner	Journal club	0	06-16-2017 06:00 AM
[NMR paper] NMR evidence for slow collective motions in cyanometmyoglobin. NMR evidence for slow collective motions in cyanometmyoglobin. Related Articles NMR evidence for slow collective motions in cyanometmyoglobin. Nat Struct Biol. 1997 Apr;4(4):292-7 Authors: Tolman JR, Flanagan JM, Kennedy MA, Prestegard JH Residual dipolar couplings observed in NMR spectra at very high magnetic fields have been measured to a high degree of accuracy for the paramagnetic protein cyanometmyoglobin. Deviations of these measurements from predictions based on available crystallographic and solution structures are largely systematic...	nmrlearner	Journal club	0	08-22-2010 03:31 PM
[NMR paper] NMR evidence for slow collective motions in cyanometmyoglobin. NMR evidence for slow collective motions in cyanometmyoglobin. Related Articles NMR evidence for slow collective motions in cyanometmyoglobin. Nat Struct Biol. 1997 Apr;4(4):292-7 Authors: Tolman JR, Flanagan JM, Kennedy MA, Prestegard JH Residual dipolar couplings observed in NMR spectra at very high magnetic fields have been measured to a high degree of accuracy for the paramagnetic protein cyanometmyoglobin. Deviations of these measurements from predictions based on available crystallographic and solution structures are largely systematic...	nmrlearner	Journal club	0	08-22-2010 03:03 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off